myRT

myRT report for GCA_002263945.1_ASM226394v1

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Seq: NNAI01000126.1 Escherichia coli strain WW48 NODE_126_length_4111_cov_59.4793, whole genome shotgun sequence (4111 bp)
Overview 1 RT 1: 563-3425 bp Neighborhood of RT #1 [563, 3463] RVT-GII InsA Rep_3 Feature: gene Location: 563-814 bp Feature: gene Location: 814-1041 bp Feature: gene Location: 1026-2297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1215-1905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 5-1 905 bp Feature: gene Location: 2448-3145 bp Feature: domain Description: InsA Location: 2454-2721 bp Feature: domain Description: InsA Location: 2454-2721 bp Feature: gene Location: 3155-3463 bp Feature: domain Description: Rep_3 Location: 3161-3425 bp Feature: domain Description: Rep_3 Location: 31 61 -3425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677), Rep_3 (pfam01051)

Seq: NNAI01000159.1 Escherichia coli strain WW48 NODE_159_length_2272_cov_158.424, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAI01000051.1 Escherichia coli strain WW48 NODE_51_length_35065_cov_39.9954, whole genome shotgun sequence (35065 bp)
Overview 1 RT 1: 16308-20833 bp Neighborhood of RT #1 [16308, 21672] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16308-17183 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: domain Description: YeeP Location: 163 23 -17181 bp Feature: gene Location: 17409-17651 bp Feature: gene Location: 17641-17923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-1773 7 bp Feature: gene Location: 18212-18391 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: domain Description: HTH_17 Location: 1823 0-183 74 bp Feature: gene Location: 18406-21672 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-18832 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-1883 2 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: DEXDc_RapA Location: 19093 -19660 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Feature: domain Description: SF2_C_SNF Location: 2023 9-2083 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)