myRT

myRT report for GCA_002263955.1_ASM226395v1

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Seq: NNAK01000167.1 Escherichia coli strain WW41 NODE_167_length_2272_cov_138.666, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1936 bp Neighborhood of RT #1 [1, 2181] RVT-GII GIIM Feature: gene Location: 1-364 bp Feature: gene Location: 279-587 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1 738-1 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NNAK01000106.1 Escherichia coli strain WW41 NODE_106_length_9138_cov_22.7403, whole genome shotgun sequence (9138 bp)
Overview 1 RT 1: 884-5172 bp Neighborhood of RT #1 [884, 5954] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 884-1099 bp Feature: gene Location: 1190-1471 bp Feature: domain Description: HTH_XRE Location: 1205-1370 bp Feature: domain Description: HTH_XRE Location: 12 05-1370 bp Feature: gene Location: 1464-2564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605-2157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605-2 157 bp Feature: gene Location: 2641-4143 bp Feature: domain Description: PRK13889 Location: 2644-3226 bp Feature: domain Description: PRK13889 Location: 2 644-32 2 6 bp Feature: gene Location: 4953-5954 bp Feature: domain Description: CoiA Location: 5034-5172 bp Feature: domain Description: CoiA Location: 5034-5172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)

Seq: NNAK01000047.1 Escherichia coli strain WW41 NODE_47_length_35045_cov_36.4304, whole genome shotgun sequence (35045 bp)
Overview 1 RT 1: 16288-20813 bp Neighborhood of RT #1 [16288, 21652] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16288-17163 bp Feature: domain Description: YeeP Location: 16303-17161 bp Feature: domain Description: YeeP Location: 163 03 -17161 bp Feature: gene Location: 17389-17631 bp Feature: gene Location: 17621-17903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17630-17717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763 0-17717 bp Feature: gene Location: 18192-18371 bp Feature: domain Description: HTH_17 Location: 18210-18354 bp Feature: domain Description: HTH_17 Location: 18210-183 54 bp Feature: gene Location: 18386-21652 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18401-18812 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18401-18812 bp Feature: domain Description: DEXDc_RapA Location: 19073-19640 bp Feature: domain Description: DEXDc_RapA Location: 19073 -19640 bp Feature: domain Description: SF2_C_SNF Location: 20219-20813 bp Feature: domain Description: SF2_C_SNF Location: 20219-20813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)

Seq: NNAK01000136.1 Escherichia coli strain WW41 NODE_136_length_4275_cov_61.4536, whole genome shotgun sequence (4275 bp)
Overview 1 RT 1: 244-3589 bp Neighborhood of RT #1 [244, 3627] PRK10276 RVT-GII InsA Rep_3 Feature: gene Location: 244-573 bp Feature: domain Description: PRK10276 Location: 247-568 bp Feature: domain Description: PRK10276 Location: 24 7-568 bp Feature: gene Location: 726-977 bp Feature: gene Location: 977-2461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-2069 bp Feature: gene Location: 2612-3309 bp Feature: domain Description: InsA Location: 2618-2885 bp Feature: domain Description: InsA Location: 2618-2885 bp Feature: gene Location: 3319-3627 bp Feature: domain Description: Rep_3 Location: 3325-3589 bp Feature: domain Description: Rep_3 Location: 3325-3589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), Rep_3 (pfam01051), RVT-GII