myRT

myRT report for GCA_002264025.1_ASM226402v1

Download annotations/find similar RTs

Seq: NNAP01000120.1 Escherichia coli strain WW2 NODE_120_length_5265_cov_31.9288, whole genome shotgun sequence (5265 bp)
Overview 1 RT 1: 1-2672 bp Neighborhood of RT #1 [1, 2686] InsA RVT-GII PRK10276 Feature: gene Location: 1-218 bp Feature: domain Description: InsA Location: 7-217 bp Feature: domain Description: InsA Location: 7-21 7 bp Feature: gene Location: 371-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1 463 bp Feature: gene Location: 1855-2106 bp Feature: gene Location: 2261-2686 bp Feature: domain Description: PRK10276 Location: 2264-2672 bp Feature: domain Description: PRK1 0276 Location: 2264-2672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NNAP01000134.1 Escherichia coli strain WW2 NODE_134_length_3924_cov_23.8659, whole genome shotgun sequence (3924 bp)
Overview 1 RT 1: 50-2855 bp Neighborhood of RT #1 [50, 2855] RVT-GII GIIM PHA02517 Feature: gene Location: 50-418 bp Feature: gene Location: 333-641 bp Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792 -1990 bp Feature: gene Location: 2316-2495 bp Feature: domain Description: PHA02517 Location: 2319-2496 bp Feature: domain Description: PHA02 517 Location: 2 319-2 496 bp Feature: gene Location: 2643-2855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NNAP01000098.1 Escherichia coli strain WW2 NODE_98_length_8673_cov_16.1242, whole genome shotgun sequence (8673 bp)
Overview 1 RT 1: 853-5953 bp Neighborhood of RT #1 [853, 7809] TIGR02646 COG3950 RVT-Retrons SSL2 Feature: gene Location: 853-1503 bp Feature: domain Description: TIGR02646 Location: 919-1324 bp Feature: domain Description: TIGR02646 Location: 919-13 24 bp Feature: gene Location: 1506-3158 bp Feature: domain Description: COG3950 Location: 1704-3120 bp Feature: domain Description: COG3 950 Location: 1704-3 120 bp Feature: gene Location: 3155-4090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3257-3857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 257-3 857 bp Feature: gene Location: 4550-4775 bp Feature: gene Location: 4819-7809 bp Feature: domain Description: SSL2 Location: 4975-5953 bp Feature: domain Description: SSL2 Location: 4975-5953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061), TIGR02646 (TIGR02646 family protein)

Seq: NNAP01000111.1 Escherichia coli strain WW2 NODE_111_length_6397_cov_19.5595, whole genome shotgun sequence (6397 bp)
Overview 1 RT 1: 339-1952 bp Neighborhood of RT #1 [339, 1954] RVT-GII YeeP Feature: gene Location: 339-621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345-435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 5-4 35 bp Feature: gene Location: 611-853 bp Feature: gene Location: 1079-1954 bp Feature: domain Description: YeeP Location: 1094-1952 bp Feature: domain Description: YeeP Location: 1094 -1952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII