myRT

myRT report for GCA_002264045.1_ASM226404v1

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Seq: NNAO01000053.1 Escherichia coli strain WW223 NODE_53_length_33772_cov_25.5874, whole genome shotgun sequence (33772 bp)
Overview 1 RT 1: 27819-32889 bp Neighborhood of RT #1 [27819, 32889] CoiA PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 27819-28820 bp Feature: domain Description: CoiA Location: 27900-28038 bp Feature: domain Description: CoiA Location: 27900-28038 bp Feature: gene Location: 29630-31132 bp Feature: domain Description: PRK13889 Location: 29633-30215 bp Feature: domain Description: PRK1 3889 Location: 29633-3021 5 bp Feature: gene Location: 31209-32309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31350-31902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 350-31 902 bp Feature: gene Location: 32302-32583 bp Feature: domain Description: HTH_XRE Location: 32317-32482 bp Feature: domain Description: HTH_XRE Location: 3231 7-32482 bp Feature: gene Location: 32674-32889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoiA (pfam06054), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NNAO01000051.1 Escherichia coli strain WW223 NODE_51_length_35064_cov_34.1824, whole genome shotgun sequence (35064 bp)
Overview 1 RT 1: 16308-20833 bp Neighborhood of RT #1 [16308, 21672] YeeP RVT-GII HTH_17 PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF Feature: gene Location: 16308-17183 bp Feature: domain Description: YeeP Location: 16323-17181 bp Feature: domain Description: YeeP Location: 1632 3-17181 bp Feature: gene Location: 17409-17651 bp Feature: gene Location: 17641-17923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17650-17737 bp Feature: gene Location: 18212-18391 bp Feature: domain Description: HTH_17 Location: 18230-18374 bp Feature: domain Description: HTH_17 Location: 182 30-18374 bp Feature: gene Location: 18406-21672 bp Feature: domain Description: PLDc_N_DEXD_c Location: 18421-18832 bp Feature: domain Description: PLDc_N_DEXD_c Location: 1842 1-18832 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: DEXDc_RapA Location: 19093-19660 bp Feature: domain Description: SF2_C_SNF Location: 20239-20833 bp Feature: domain Description: SF2 _C_SNF Location: 2 02 39-2 0833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, HTH_17 (pfam12728), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)