myRT

myRT report for GCA_002264525.1_ASM226452v1

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Seq: NPGS01000070.1 Klebsiella pneumoniae strain K2080 NODE_70_length_1892_cov_157.012, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 1-1442 bp Neighborhood of RT #1 [1, 1834] RVT-GII Feature: gene Location: 1-217 bp Feature: gene Location: 350-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NPGS01000006.1 Klebsiella pneumoniae strain K2080 NODE_6_length_263792_cov_18.0182, whole genome shotgun sequence (263792 bp)
Overview 1 RT 1: 17508-23770 bp Neighborhood of RT #1 [17508, 23770] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17508-18611 bp Feature: domain Description: STKc_PknB_like Location: 17640-18081 bp Feature: domain Description: STKc_PknB_like Location: 17640-18081 bp Feature: gene Location: 18681-18923 bp Feature: gene Location: 19170-20270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19353-19881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19353-19881 bp Feature: gene Location: 20385-22661 bp Feature: domain Description: AAA_15 Location: 20418-21426 bp Feature: domain Description: AAA_15 Location: 2 0418-2 142 6 bp Feature: gene Location: 23540-23770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NPGS01000048.1 Klebsiella pneumoniae strain K2080 NODE_48_length_12491_cov_21.5615, whole genome shotgun sequence (12491 bp)
Overview 1 RT 1: 2883-6486 bp Neighborhood of RT #1 [2883, 6611] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2883-3140 bp Feature: gene Location: 3108-3283 bp Feature: gene Location: 4020-5687 bp Feature: RT Description: RVT_N Location: 4068-4305 bp Feature: RT Description: RVT_N Location: 4068-43 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4356-4998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 56-4998 bp Feature: domain Description: GIIM Note: maturase Location: 5049-5283 bp Feature: domain Description: GIIM Note: maturase Location: 5049-5283 bp Feature: domain Description: HNHc Note: nucleases Location: 5493-5652 bp Feature: domain Description: HNHc Note: nucleases Location: 5493 -5652 bp Feature: gene Location: 6001-6192 bp Feature: gene Location: 6189-6611 bp Feature: domain Description: DUF1380 Location: 6192-6486 bp Feature: domain Description: DUF13 80 Location: 6192-6486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)