myRT

myRT report for GCA_002265005.1_ASM226500v1

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Seq: NPHQ01000086.1 Escherichia coli strain E4903 NODE_87_length_2206_cov_230.647, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 1-1869 bp Neighborhood of RT #1 [1, 2114] RVT-GII GIIM Feature: gene Location: 1-297 bp Feature: gene Location: 212-520 bp Feature: gene Location: 591-2114 bp Ori: OZS00130.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1 596 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 -1 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NPHQ01000003.1 Escherichia coli strain E4903 NODE_3_length_309557_cov_45.5513, whole genome shotgun sequence (309557 bp)
Overview 1 RT 1: 1-4397 bp Neighborhood of RT #1 [1, 4504] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1-128 bp Feature: gene Location: 88-1229 bp Feature: domain Description: Arm-DNA-bind_3 Location: 97-349 bp Feature: domain Description: Arm-DNA-bind_3 Location: 97-349 bp Feature: gene Location: 1684-2616 bp Ori: OZS04044.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-2380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-2 380 bp Feature: gene Location: 2618-3586 bp Feature: gene Location: 4232-4504 bp Ori: OZS04046.1 Feature: domain Description: PRK09678 Location: 4241-4397 bp Feature: domain Description: PRK09678 Location: 42 41-4397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: NPHQ01000005.1 Escherichia coli strain E4903 NODE_5_length_271664_cov_43.8279, whole genome shotgun sequence (271664 bp)
Overview 1 RT 1: 148517-153857 bp Neighborhood of RT #1 [148517, 153880] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 148517-149422 bp Feature: gene Location: 149396-149683 bp Feature: gene Location: 149908-150447 bp Ori: OZS03627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150238-150316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15023 8-1503 16 bp Feature: gene Location: 150475-150996 bp Ori: OZS03628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150481-150763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150481-150763 bp Feature: domain Description: GIIM Note: maturase Location: 150811-150991 bp Feature: domain Description: GIIM Note: maturase Location: 150811-150991 bp Feature: gene Location: 151579-152808 bp Ori: OZS03629.1 Feature: domain Description: YesM Location: 152059-152800 bp Feature: domain Description: YesM Location: 152059-152800 bp Feature: gene Location: 152825-153880 bp Ori: OZS03630.1 Feature: domain Description: YesN Location: 152828-153218 bp Feature: domain Description: YesN Location: 152828-153 218 bp Feature: domain Description: YesN Location: 153560-153857 bp Feature: domain Description: YesN Location: 153 560-153 857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: NPHQ01000038.1 Escherichia coli strain E4903 NODE_38_length_36294_cov_41.2445, whole genome shotgun sequence (36294 bp)
Overview 1 RT 1: 11316-16523 bp Neighborhood of RT #1 [11316, 16528] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 11316-11630 bp Feature: gene Location: 11811-12017 bp Feature: gene Location: 12666-14567 bp Ori: OZS00714.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12933-13764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12933-13764 bp Feature: domain Description: Intron_maturas2 Location: 13878-14136 bp Feature: domain Description: Intron_maturas2 Location: 13878-14 136 bp Feature: domain Description: HNHc Note: nucleases Location: 14310-14472 bp Feature: domain Description: HNHc Note: nucleases Location: 14 310-14 4 72 bp Feature: gene Location: 14750-16039 bp Feature: gene Location: 16091-16528 bp Ori: OZS00715.1 Gene: psiB Feature: domain Description: psiB Location: 16097-16523 bp Feature: domain Description: psiB Location: 16097-16523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)