myRT

myRT report for GCA_002265025.1_ASM226502v1

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Seq: NPHO01000092.1 Escherichia coli strain E2239 NODE_92_length_2272_cov_225.602, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OZR90209.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1687-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NPHO01000008.1 Escherichia coli strain E2239 NODE_8_length_181408_cov_48.4829, whole genome shotgun sequence (181408 bp)
Overview 1 RT 1: 23962-28253 bp Neighborhood of RT #1 [23962, 28253] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23962-25191 bp Ori: OZR92943.1 Feature: domain Description: YesM Location: 24442-25183 bp Feature: domain Description: YesM Location: 2 4442 -2 5183 bp Feature: gene Location: 25264-25452 bp Feature: gene Location: 25774-26295 bp Ori: OZR92945.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5780-2 6062 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: domain Description: GIIM Note: maturase Location: 2 6110-2 62 90 bp Feature: gene Location: 26323-26862 bp Ori: OZR92946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6653-2 6731 bp Feature: gene Location: 27087-27374 bp Feature: gene Location: 27348-28253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NPHO01000004.1 Escherichia coli strain E2239 NODE_4_length_310194_cov_53.3654, whole genome shotgun sequence (310194 bp)
Overview 1 RT 1: 125-4910 bp Neighborhood of RT #1 [125, 5017] PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 125-598 bp Feature: domain Description: PHA02517 Location: 131-596 bp Feature: domain Description: PHA02517 Location: 13 1-596 bp Feature: gene Location: 601-1742 bp Feature: domain Description: Arm-DNA-bind_3 Location: 610-862 bp Feature: domain Description: Arm-DNA-bind_3 Location: 610-862 bp Feature: gene Location: 2197-3129 bp Ori: OZR93697.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: gene Location: 3131-4099 bp Feature: gene Location: 4745-5017 bp Ori: OZR93699.1 Feature: domain Description: PRK09678 Location: 4754-4910 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)