myRT

myRT report for GCA_002265035.1_ASM226503v1

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Seq: NPHR01000104.1 Escherichia coli strain E834 NODE_104_length_2272_cov_173.141, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-586 bp Feature: gene Location: 657-2180 bp Ori: OZS05067.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NPHR01000001.1 Escherichia coli strain E834 NODE_1_length_523569_cov_31.2014, whole genome shotgun sequence (523569 bp)
Overview 1 RT 1: 502933-509337 bp Neighborhood of RT #1 [502933, 509337] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 502933-503163 bp Feature: gene Location: 504046-506322 bp Ori: OZS10032.1 Feature: domain Description: AAA_15 Location: 504079-505087 bp Feature: domain Description: AAA_15 Location: 504079-505087 bp Feature: gene Location: 506437-507537 bp Ori: OZS10033.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 506620-507148 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50662 0-507148 bp Feature: gene Location: 508193-508687 bp Ori: OZS10060.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 508337-508511 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 508337-508511 bp Feature: gene Location: 509059-509337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: NPHR01000007.1 Escherichia coli strain E834 NODE_7_length_177181_cov_34.392, whole genome shotgun sequence (177181 bp)
Overview 1 RT 1: 23962-28253 bp Neighborhood of RT #1 [23962, 28253] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23962-25191 bp Ori: OZS08249.1 Feature: domain Description: YesM Location: 24442-25183 bp Feature: domain Description: YesM Location: 24442-25183 bp Feature: gene Location: 25264-25452 bp Feature: gene Location: 25774-26295 bp Ori: OZS08251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: gene Location: 26323-26862 bp Ori: OZS08252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653 -2673 1 bp Feature: gene Location: 27087-27374 bp Feature: gene Location: 27348-28253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: NPHR01000020.1 Escherichia coli strain E834 NODE_20_length_77179_cov_34.9376, whole genome shotgun sequence (77179 bp)
Overview 1 RT 1: 72678-77179 bp Neighborhood of RT #1 [72678, 77179] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 72678-72950 bp Ori: OZS06887.1 Feature: domain Description: PRK09678 Location: 72687-72843 bp Feature: domain Description: PRK09678 Location: 72687-7284 3 bp Feature: gene Location: 73596-74564 bp Feature: gene Location: 74566-75498 bp Ori: OZS06889.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74668-75262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74 668-75262 bp Feature: gene Location: 75953-77094 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75962-76214 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75962-76214 bp Feature: gene Location: 77054-77179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: NPHR01000099.1 Escherichia coli strain E834 NODE_99_length_2489_cov_126.667, whole genome shotgun sequence (2489 bp)
Overview 1 RT 1: 730-2362 bp Neighborhood of RT #1 [730, 2397] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 730-2397 bp Ori: OZS05081.1 Gene: ltrA Feature: domain Description: RVT_N Location: 778-1015 bp Feature: domain Description: RVT_N Location: 778-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1708 bp Feature: domain Description: GIIM Note: maturase Location: 1759-1993 bp Feature: domain Description: GIIM Note: maturase Location: 175 9-1993 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-2362 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-2362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)