myRT

myRT report for GCA_002265425.1_ASM226542v1

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Seq: NOUZ01000024.1 Klebsiella pneumoniae strain QJJ29 QJJ_29_S108_L004_R1_001__paired__contig_25, whole genome shotgun sequence (263973 bp)
Overview 1 RT 1: 17400-23662 bp Neighborhood of RT #1 [17400, 23662] STKc_PknB_like RVT-Retrons AAA_15 Feature: gene Location: 17400-18503 bp Feature: domain Description: STKc_PknB_like Location: 17532-17973 bp Feature: domain Description: STKc_PknB_like Location: 1 7532-1 7973 bp Feature: gene Location: 18573-18815 bp Feature: gene Location: 19062-20162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19245-19773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9245-1 9773 bp Feature: gene Location: 20277-22553 bp Feature: domain Description: AAA_15 Location: 20310-21318 bp Feature: domain Description: AAA_1 5 Location: 2031 0-21 31 8 bp Feature: gene Location: 23432-23662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NOUZ01000057.1 Klebsiella pneumoniae strain QJJ29 QJJ_29_S108_L004_R1_001__paired__contig_59, whole genome shotgun sequence (1997 bp)
Overview 1 RT 1: 58-1793 bp Neighborhood of RT #1 [58, 1793] RVT-GII Feature: gene Location: 58-1542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1150 bp Feature: gene Location: 1542-1793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NOUZ01000074.1 Klebsiella pneumoniae strain QJJ29 QJJ_29_S108_L004_R1_001__paired__contig_82, whole genome shotgun sequence (13776 bp)
Overview 1 RT 1: 7272-11000 bp Neighborhood of RT #1 [7272, 11000] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 7272-7694 bp Feature: domain Description: DUF1380 Location: 7275-7569 bp Feature: domain Description: DUF13 80 Location: 7275-7569 bp Feature: gene Location: 7691-7882 bp Feature: gene Location: 8196-9863 bp Feature: RT Description: RVT_N Location: 8244-8481 bp Feature: RT Description: RVT_N Location: 8244-8481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8532-9174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853 2-9174 bp Feature: domain Description: GIIM Note: maturase Location: 9225-9459 bp Feature: domain Description: GIIM Note: maturase Location: 9225-9459 bp Feature: domain Description: HNHc Note: nucleases Location: 9669-9828 bp Feature: domain Description: HNHc Note: nucleases Location: 9669-9828 bp Feature: gene Location: 10600-10775 bp Feature: gene Location: 10743-11000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)