myRT

myRT report for GCA_002266285.1_ASM226628v1

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Seq: NPMS01000001.1 Virgibacillus indicus strain P2-C2 NODE_1_length_1133008_cov_103.99, whole genome shotgun sequence (1133008 bp)
Overview 1 RT 1: 28418-32606 bp 2 RT 2: 278057-283596 bp Neighborhood of RT #1 [28418, 32606] HXXEE RVT-GII GIIM Neighborhood of RT #2 [278057, 283634] RadC RVT-GII Intron_maturas2 HNHc PRK00024 PRK13927 Feature: gene Location: 28418-28954 bp Feature: domain Description: HXXEE Location: 28454-28829 bp Feature: domain Description: HXXEE Location: 28454-28829 bp Feature: gene Location: 29150-29362 bp Feature: gene Location: 30381-31709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30636-31329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30636-31 329 bp Feature: domain Description: GIIM Note: maturase Location: 31419-31623 bp Feature: domain Description: GIIM Note: maturase Location: 31 41 9-31 623 bp Feature: gene Location: 31847-32044 bp Feature: gene Location: 32205-32606 bp Feature: gene Location: 278057-278950 bp Feature: gene Location: 279129-279698 bp Feature: domain Description: RadC Location: 279153-279678 bp Feature: domain Description: RadC Location: 2791 53-279678 bp Feature: gene Location: 280249-282132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280513-281353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28051 3-281 353 bp Feature: domain Description: Intron_maturas2 Location: 281512-281719 bp Feature: domain Description: Intron_maturas2 Location: 281 51 2-281 71 9 bp Feature: domain Description: HNHc Note: nucleases Location: 281911-282076 bp Feature: domain Description: HNHc Note: nucleases Location: 281 91 1 -282076 bp Feature: gene Location: 282213-282353 bp Feature: domain Description: PRK00024 Location: 282216-282348 bp Feature: domain Description: PRK00024 Location: 28221 6-282348 bp Feature: gene Location: 282594-283634 bp Feature: domain Description: PRK13927 Location: 282612-283596 bp Feature: domain Description: PRK1 3927 Location: 28261 2-283596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HXXEE (pfam13787), RVT-GII, GIIM (pfam08388), RadC (pfam04002), Intron_maturas2 (pfam01348), HNHc (smart00507), PRK00024 (DNA repair protein RadC), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: NPMS01000003.1 Virgibacillus indicus strain P2-C2 NODE_3_length_356743_cov_144.315, whole genome shotgun sequence (356743 bp)
Overview 1 RT 1: 189664-200139 bp Neighborhood of RT #1 [189664, 200147] NorB COG2461 RVT-GII RVT-GII GIIM RVT-GII HNHc KOG2565 YafY Feature: gene Location: 189664-192015 bp Feature: domain Description: NorB Location: 189733-191968 bp Feature: domain Description: NorB Location: 189733-191968 bp Feature: gene Location: 192133-192609 bp Feature: domain Description: COG2461 Location: 192166-192559 bp Feature: domain Description: COG2 461 Location: 192 166-192 559 bp Feature: gene Location: 193670-194539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193961-194510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193961-194510 bp Feature: gene Location: 195058-196302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195262-195916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952 62 -195916 bp Feature: domain Description: GIIM Note: maturase Location: 195997-196216 bp Feature: domain Description: GIIM Note: maturase Location: 195997-1962 16 bp Feature: gene Location: 196430-197335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196436-196532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196436-196532 bp Feature: domain Description: HNHc Note: nucleases Location: 197087-197225 bp Feature: domain Description: HNHc Note: nucleases Location: 197087-1972 2 5 bp Feature: gene Location: 197788-198981 bp Feature: domain Description: KOG2565 Location: 197827-198973 bp Feature: domain Description: KOG2 565 Location: 19782 7-198973 bp Feature: gene Location: 199254-200147 bp Feature: domain Description: YafY Location: 199257-200139 bp Feature: domain Description: YafY Location: 1992 57-2 00139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NorB (COG3256), COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), YafY (COG2378)

Seq: NPMS01000023.1 Virgibacillus indicus strain P2-C2 NODE_23_length_1884_cov_346.541, whole genome shotgun sequence (1884 bp)
Overview 1 RT 1: 77-1175 bp Neighborhood of RT #1 [77, 1339] RVT-GII GIIM Feature: gene Location: 77-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-893 bp Feature: domain Description: GIIM Note: maturase Location: 944-1175 bp Feature: domain Description: GIIM Note: maturase Location: 944-1175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NPMS01000004.1 Virgibacillus indicus strain P2-C2 NODE_4_length_355684_cov_116.765, whole genome shotgun sequence (355684 bp)
Overview 1 RT 1: 115621-118893 bp Neighborhood of RT #1 [115621, 118893] DDE_Tnp_IS66 RVT-GII HTH_3 TPR_12 Feature: gene Location: 115621-116217 bp Feature: gene Location: 116571-116696 bp Feature: domain Description: DDE_Tnp_IS66 Location: 116574-116682 bp Feature: domain Description: DDE_Tnp_IS66 Location: 116574 -116682 bp Feature: gene Location: 116802-116941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116826-116919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116826-116919 bp Feature: gene Location: 117423-118688 bp Feature: domain Description: HTH_3 Location: 117450-117594 bp Feature: domain Description: HTH_3 Location: 1174 50-117594 bp Feature: domain Description: TPR_12 Location: 118122-118317 bp Feature: domain Description: TPR_12 Location: 118122-118317 bp Feature: gene Location: 118705-118893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, HTH_3 (pfam01381), TPR_12 (pfam13424)