myRT

myRT report for GCA_002269015.1_ASM226901v1

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Seq: NQKJ01000116.1 Pseudomonas lundensis strain L1788 Pseudomonas_lundensis_L1788_Contig116, whole genome shotgun sequence (1924 bp)
Overview 1 RT 1: 72-1326 bp Neighborhood of RT #1 [72, 1493] RVT-GII GIIM Feature: gene Location: 72-1493 bp Ori: OZY34782.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 044 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1 098-1 326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NQKJ01000034.1 Pseudomonas lundensis strain L1788 Pseudomonas_lundensis_L1788_Contig34, whole genome shotgun sequence (49130 bp)
Overview 1 RT 1: 40171-46749 bp Neighborhood of RT #1 [40171, 47375] MMSDH LysR RVT-G2L4 AAA_21 Feature: gene Location: 40171-41682 bp Ori: OZY36074.1 Gene: mmsA Feature: domain Description: MMSDH Location: 40204-41629 bp Feature: domain Description: MMSDH Location: 402 04-4162 9 bp Feature: gene Location: 41795-42775 bp Ori: OZY36075.1 Feature: domain Description: LysR Location: 41831-42683 bp Feature: domain Description: LysR Location: 41831-42 683 bp Feature: gene Location: 43647-44894 bp Ori: OZY36076.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 43866-44454 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 43866-44454 bp Feature: gene Location: 45093-45698 bp Feature: gene Location: 45930-47375 bp Ori: OZY36078.1 Feature: domain Description: AAA_21 Location: 46062-46749 bp Feature: domain Description: AAA_2 1 Location: 46062 -46749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MMSDH (TIGR01722), LysR (COG0583), RVT-G2L4, AAA_21 (pfam13304)

Seq: NQKJ01000009.1 Pseudomonas lundensis strain L1788 Pseudomonas_lundensis_L1788_Contig9, whole genome shotgun sequence (123768 bp)
Overview 1 RT 1: 48186-55478 bp Neighborhood of RT #1 [48186, 55483] LTA_synthase DUF2188 RVT_N RVT-GII GIIM HNH groEL groES Feature: gene Location: 48186-50135 bp Ori: OZY37822.1 Feature: domain Description: LTA_synthase Location: 49014-49824 bp Feature: domain Description: LTA_synthase Location: 49014-49824 bp Feature: gene Location: 50456-50680 bp Ori: OZY37823.1 Feature: domain Description: DUF2188 Location: 50474-50651 bp Feature: domain Description: DUF2188 Location: 50474-50651 bp Feature: gene Location: 50797-52458 bp Ori: OZY37824.1 Gene: ltrA Feature: domain Description: RVT_N Location: 50851-51091 bp Feature: domain Description: RVT_N Location: 50851-51091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51139-51784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5113 9-51784 bp Feature: domain Description: GIIM Note: maturase Location: 51835-52069 bp Feature: domain Description: GIIM Note: maturase Location: 5183 5-52069 bp Feature: domain Description: HNH Note: nucleases Location: 52309-52447 bp Feature: domain Description: HNH Note: nucleases Location: 523 09-52447 bp Feature: gene Location: 53497-55140 bp Ori: OZY37825.1 Gene: groL Feature: domain Description: groEL Location: 53503-55123 bp Feature: domain Description: groEL Location: 53 503 -55123 bp Feature: gene Location: 55190-55483 bp Ori: OZY37826.1 Feature: domain Description: groES Location: 55193-55478 bp Feature: domain Description: groES Location: 55193 -55478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTA_synthase (cd16015), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), groEL (PRK12852), groES (PRK14533)