myRT

myRT report for GCA_002269405.1_ASM226940v1

Download annotations/find similar RTs

Seq: CP022932.1 Candidatus Hamiltonella defensa strain MI47 genome (2039134 bp)
Overview 1 RT 1: 804565-809550 bp 2 RT 2: 1513988-1517860 bp 3 RT 3: 1534341-1537575 bp 4 RT 4: 1740386-1743252 bp Neighborhood of RT #1 [804565, 809550] Rve PRK09956 RVT_N RVT-GII GIIM HNHc PRK09857 Neighborhood of RT #2 [1513988, 1517877] RVT-CRISPR-like GIIM RVT-GII GIIM PRK09956 BRCT_DNA_ligase_like Neighborhood of RT #3 [1534341, 1537694] Transposase_31 RVT_N RVT-GII DDE_Tnp_Tn3 DUF4096 Neighborhood of RT #4 [1740386, 1743272] InsE RVT-GII Arm-DNA-bind_1 Phage_int_SAM_4 INT_Lambda_C Exc Feature: gene Location: 804565-805269 bp Ori: ASV33370.1 Feature: domain Description: Rve Location: 804568-805213 bp Feature: domain Description: Rve Location: 804568-80521 3 bp Feature: gene Location: 805910-806338 bp Feature: domain Description: PRK09956 Location: 805913-806312 bp Feature: domain Description: PRK09956 Location: 80591 3-80631 2 bp Feature: gene Location: 806427-808088 bp Ori: ASV34350.1 Gene: ltrA Feature: domain Description: RVT_N Location: 806463-806697 bp Feature: domain Description: RVT_N Location: 806463-806697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806751-807396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806751 -807396 bp Feature: domain Description: GIIM Note: maturase Location: 807450-807681 bp Feature: domain Description: GIIM Note: maturase Location: 807450-807681 bp Feature: domain Description: HNHc Note: nucleases Location: 807894-808053 bp Feature: domain Description: HNHc Note: nucleases Location: 807894-808053 bp Feature: gene Location: 808379-809302 bp Ori: ASV33371.1 Feature: domain Description: PRK09857 Location: 808382-809279 bp Feature: domain Description: PRK09857 Location: 808382-809279 bp Feature: gene Location: 809299-809550 bp Feature: gene Location: 1513988-1514128 bp Feature: gene Location: 1514213-1514689 bp Feature: gene Location: 1514843-1515502 bp Ori: ASV33852.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1514852-1515122 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 51 4852-1 51 51 22 bp Feature: domain Description: GIIM Note: maturase Location: 1515197-1515410 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 51 97-1 51 541 0 bp Feature: gene Location: 1515680-1516457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515686-1515764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 5686-1 51 5764 bp Feature: domain Description: GIIM Note: maturase Location: 1515818-1516049 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 581 8-1 51 6049 bp Feature: gene Location: 1516547-1516924 bp Feature: domain Description: PRK09956 Location: 1516550-1516913 bp Feature: domain Description: PRK09956 Location: 1 51 6550-1 51 691 3 bp Feature: gene Location: 1516993-1517877 bp Ori: ASV33853.1 Feature: domain Description: BRCT_DNA_ligase_like Location: 1517611-1517860 bp Feature: domain Description: BRCT_DNA_ligase_like Location: 1 51 761 1 -1 51 7860 bp Feature: gene Location: 1534341-1534592 bp Feature: domain Description: Transposase_31 Location: 1534476-1534590 bp Feature: domain Description: Transposase_31 Location: 1 534476-1 534590 bp Feature: gene Location: 1535005-1535196 bp Feature: gene Location: 1535207-1536905 bp Gene: ltrA Feature: domain Description: RVT_N Location: 1535258-1535501 bp Feature: domain Description: RVT_N Location: 1 535258-1 535501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1535546-1535648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 535546-1 535648 bp Feature: gene Location: 1537070-1537270 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1537073-1537184 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 537073-1 5371 84 bp Feature: gene Location: 1537329-1537694 bp Ori: ASV33873.1 Feature: domain Description: DUF4096 Location: 1537377-1537575 bp Feature: domain Description: DUF4096 Location: 1 537377-1 537575 bp Feature: gene Location: 1740386-1740637 bp Feature: gene Location: 1740841-1741056 bp Ori: ASV34424.1 Feature: domain Description: InsE Location: 1740862-1741021 bp Feature: domain Description: InsE Location: 1 740862-1 741 021 bp Feature: gene Location: 1741351-1741926 bp Ori: ASV34052.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741594-1741861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 594-1 741 861 bp Feature: gene Location: 1742009-1743070 bp Feature: domain Description: Arm-DNA-bind_1 Location: 1742012-1742180 bp Feature: domain Description: Arm-DNA-bind_1 Location: 1 74201 2-1 7421 80 bp Feature: domain Description: Phage_int_SAM_4 Location: 1742243-1742468 bp Feature: domain Description: Phage_int_SAM_4 Location: 1 742243-1 742468 bp Feature: domain Description: INT_Lambda_C Location: 1742558-1743059 bp Feature: domain Description: INT_Lambda_C Location: 1 742558-1 743059 bp Feature: gene Location: 1743045-1743272 bp Ori: ASV34053.1 Feature: domain Description: Exc Location: 1743048-1743252 bp Feature: domain Description: Exc Location: 1 743048-1 743252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PRK09956 (ISNCY family transposase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09857 (recombination-promoting nuclease RpnA), RVT-CRISPR, BRCT_DNA_ligase_like (cd17748), Transposase_31 (pfam04754)
DDE_Tnp_Tn3 (pfam01526), DUF4096 (pfam13340), InsE (COG2963), Arm-DNA-bind_1 (pfam09003), Phage_int_SAM_4 (pfam13495), INT_Lambda_C (cd00800), Exc (pfam07825)

Seq: CP022934.1 Candidatus Hamiltonella defensa strain MI47 plasmid p2_M47_H.defensa, complete sequence (57469 bp)
Overview 1 RT 1: 189-5369 bp Neighborhood of RT #1 [189, 5368] PRK09956 RVT-GII GIIM HNH Transposase_31 RVT-GII GIIM RVT_N Transposase_31 Feature: gene Location: 189-830 bp Feature: domain Description: PRK09956 Location: 258-816 bp Feature: domain Description: PRK09956 Location: 2 58-816 bp Feature: gene Location: 700-1740 bp Ori: ASV34514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-796 bp Feature: domain Description: GIIM Note: maturase Location: 868-1099 bp Feature: domain Description: GIIM Note: maturase Location: 868-1099 bp Feature: domain Description: HNH Note: nucleases Location: 1330-1468 bp Feature: domain Description: HNH Note: nucleases Location: 1330-1468 bp Feature: domain Description: Transposase_31 Location: 1570-1687 bp Feature: domain Description: Transposase_31 Location: 1570-1687 bp Feature: gene Location: 1903-3210 bp Ori: ASV34515.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2203-2830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 03-2 830 bp Feature: domain Description: GIIM Note: maturase Location: 2905-3118 bp Feature: domain Description: GIIM Note: maturase Location: 2 905-3118 bp Feature: gene Location: 3708-4543 bp Feature: domain Description: RVT_N Location: 3756-3996 bp Feature: domain Description: RVT_N Location: 3756-3996 bp Feature: gene Location: 5126-5368 bp Feature: domain Description: Transposase_31 Location: 5144-5369 bp Feature: domain Description: Transposase_31 Location: 5144-5369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09956 (ISNCY family transposase), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Transposase_31 (pfam04754), RVT_N (pfam13655)

Seq: CP022933.1 Candidatus Hamiltonella defensa strain MI47 plasmid p1_M47_H.defensa sequence (91108 bp)
Overview 1 RT 1: 25006-27580 bp Neighborhood of RT #1 [25006, 27580] antidote_HigA RVT-GII DDE_Tnp_1_3 Feature: gene Location: 25006-25280 bp Feature: gene Location: 25280-25600 bp Ori: ASV34458.1 Gene: higA Feature: domain Description: antidote_HigA Location: 25295-25520 bp Feature: domain Description: antidote_HigA Location: 25295-25520 bp Feature: gene Location: 25617-26042 bp Ori: ASV34459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25677-25971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25677-25971 bp Feature: gene Location: 26184-27070 bp Feature: domain Description: DDE_Tnp_1_3 Location: 26496-26790 bp Feature: domain Description: DDE_Tnp_1_3 Location: 26496-26790 bp Feature: gene Location: 27332-27580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_HigA (TIGR02607), RVT-GII, DDE_Tnp_1_3 (pfam13612)