myRT

myRT report for GCA_002269505.1_ASM226950v1

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Seq: NQKQ01000038.1 Pseudomonas fragi strain F1801 Pseudomonas_fragi_F1801_Contig38, whole genome shotgun sequence (31612 bp)
Overview 1 RT 1: 369-3238 bp Neighborhood of RT #1 [369, 3238] RVT-UG16 LexA Feature: gene Location: 369-1289 bp Ori: PAA04687.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 372-555 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 372-555 bp Feature: gene Location: 2167-2898 bp Ori: PAA04688.1 Feature: domain Description: LexA Location: 2266-2887 bp Feature: domain Description: LexA Location: 2266-2887 bp Feature: gene Location: 2978-3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16, LexA (COG1974)

Seq: NQKQ01000015.1 Pseudomonas fragi strain F1801 Pseudomonas_fragi_F1801_Contig15, whole genome shotgun sequence (120538 bp)
Overview 1 RT 1: 65459-75382 bp Neighborhood of RT #1 [65459, 75384] Lrp COG3177 RVT-GII Intron_maturas2 HNHc PBP2_BvgS_HisK_like PRK09776 PAS_8 PRK11359 PRK11359 PRK05658 Feature: gene Location: 65459-65911 bp Ori: PAA09988.1 Feature: domain Description: Lrp Location: 65483-65894 bp Feature: domain Description: Lrp Location: 65483-65894 bp Feature: gene Location: 65944-67110 bp Ori: PAA09989.1 Feature: domain Description: COG3177 Location: 65959-67054 bp Feature: domain Description: COG3177 Location: 65959-67054 bp Feature: gene Location: 67504-69354 bp Ori: PAA09990.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67771-68590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67771-68590 bp Feature: domain Description: Intron_maturas2 Location: 68683-68995 bp Feature: domain Description: Intron_maturas2 Location: 68683-68995 bp Feature: domain Description: HNHc Note: nucleases Location: 69127-69280 bp Feature: domain Description: HNHc Note: nucleases Location: 6912 7-692 80 bp Feature: gene Location: 70063-73419 bp Ori: PAA09991.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 70168-70825 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 70168-7082 5 bp Feature: domain Description: PRK09776 Location: 71038-71374 bp Feature: domain Description: PRK09776 Location: 71038-71374 bp Feature: domain Description: PAS_8 Location: 71374-71506 bp Feature: domain Description: PAS_8 Location: 71374-71506 bp Feature: domain Description: PRK11359 Location: 71686-72073 bp Feature: domain Description: PRK11359 Location: 71686-72 073 bp Feature: domain Description: PRK11359 Location: 72091-73366 bp Feature: domain Description: PRK11359 Location: 72 091-73366 bp Feature: gene Location: 73537-75384 bp Ori: PAA09992.1 Feature: domain Description: PRK05658 Location: 73549-75382 bp Feature: domain Description: PRK05658 Location: 73549-75382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lrp (COG1522), COG3177 (Fic family protein ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS_8 (pfam13188), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated)