myRT

myRT report for GCA_002269745.1_ASM226974v1

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Seq: MJIN01000027.1 Escherichia coli 102651 102651_27, whole genome shotgun sequence (56533 bp)
Overview 1 RT 1: 14493-18653 bp Neighborhood of RT #1 [14493, 18653] TIGR02646 COG3950 RVT-Retrons DinI Feature: gene Location: 14493-15053 bp Feature: domain Description: TIGR02646 Location: 14496-14844 bp Feature: domain Description: TIGR02646 Location: 1 4496-1 4844 bp Feature: gene Location: 15173-16807 bp Feature: domain Description: COG3950 Location: 15311-16769 bp Feature: domain Description: COG3950 Location: 1 531 1 -1 6769 bp Feature: gene Location: 16807-17742 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16909-17503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6909-1 7503 bp Feature: gene Location: 18221-18454 bp Feature: domain Description: DinI Location: 18263-18449 bp Feature: domain Description: DinI Location: 1 8263-1 8449 bp Feature: gene Location: 18465-18653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DinI (pfam06183)

Seq: MJIN01000051.1 Escherichia coli 102651 102651_51, whole genome shotgun sequence (17800 bp)
Overview 1 RT 1: 5027-8666 bp Neighborhood of RT #1 [5027, 8833] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 5027-5329 bp Feature: domain Description: InsE Location: 5066-5315 bp Feature: domain Description: InsE Location: 5066-5315 bp Feature: gene Location: 5385-5810 bp Feature: domain Description: PHA02517 Location: 5409-5745 bp Feature: domain Description: PHA02 517 Location: 5409-5745 bp Feature: gene Location: 6402-7925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6675-7407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6675-7407 bp Feature: domain Description: GIIM Note: maturase Location: 7482-7680 bp Feature: domain Description: GIIM Note: maturase Location: 7482 -7680 bp Feature: gene Location: 8078-8254 bp Feature: domain Description: PHA02517 Location: 8081-8183 bp Feature: domain Description: PHA02 517 Location: 8081-8183 bp Feature: gene Location: 8420-8833 bp Feature: domain Description: COG2085 Location: 8519-8666 bp Feature: domain Description: COG2 085 Location: 8519-8666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )