myRT

myRT report for GCA_002270115.1_ASM227011v1

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Seq: NIFR01000010.1 Escherichia coli strain SZM531-1 SZM531-1-41616714_R1__paired__contig_10, whole genome shotgun sequence (266270 bp)
Overview 1 RT 1: 82-5838 bp Neighborhood of RT #1 [82, 5861] PinE COG3680 RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 82-636 bp Feature: domain Description: PinE Location: 85-622 bp Feature: domain Description: PinE Location: 85-622 bp Feature: gene Location: 694-1467 bp Feature: domain Description: COG3680 Location: 697-1465 bp Feature: domain Description: COG3680 Location: 697-1 465 bp Feature: gene Location: 2179-4014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2314-3010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 231 4-301 0 bp Feature: gene Location: 4516-4926 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4588-4900 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4588-4900 bp Feature: gene Location: 4905-5861 bp Feature: domain Description: XdhC Location: 4983-5838 bp Feature: domain Description: XdhC Location: 4983-5838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975), COG3680 (Uncharacterized protein ), PinE (COG1961)

Seq: NIFR01000012.1 Escherichia coli strain SZM531-1 SZM531-1-41616714_R1__paired__contig_12, whole genome shotgun sequence (53010 bp)
Overview 1 RT 1: 79-3527 bp Neighborhood of RT #1 [79, 3529] RVT-GII GIIM YhhI YhhI PRK01271 Feature: gene Location: 79-423 bp Feature: gene Location: 949-2271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225-1882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 5-1882 bp Feature: domain Description: GIIM Note: maturase Location: 1966-2176 bp Feature: domain Description: GIIM Note: maturase Location: 1966-2 176 bp Feature: gene Location: 2478-3251 bp Feature: domain Description: YhhI Location: 2481-2844 bp Feature: domain Description: YhhI Location: 2 481-2 844 bp Feature: domain Description: YhhI Location: 2901-3252 bp Feature: domain Description: YhhI Location: 2 901-32 52 bp Feature: gene Location: 3302-3529 bp Feature: domain Description: PRK01271 Location: 3305-3527 bp Feature: domain Description: PRK012 71 Location: 3305-352 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), PRK01271 (tautomerase PptA), RVT-GII, GIIM (pfam08388)