myRT

myRT report for GCA_002270175.1_ASM227017v1

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Seq: NIFT01000055.1 Escherichia coli strain SZM584-1 C2867, whole genome shotgun sequence (3049 bp)
Overview 1 RT 1: 436-2949 bp Neighborhood of RT #1 [436, 3049] RVT-GII PHA02517 Feature: gene Location: 436-867 bp Feature: gene Location: 782-1090 bp Feature: gene Location: 1161-2670 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1434-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 434-1 584 bp Feature: gene Location: 2751-3049 bp Feature: domain Description: PHA02517 Location: 2754-2949 bp Feature: domain Description: PHA0251 7 Location: 2754-2949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: NIFT01000109.1 Escherichia coli strain SZM584-1 scaffold11, whole genome shotgun sequence (27274 bp)
Overview 1 RT 1: 1-5725 bp Neighborhood of RT #1 [1, 5760] RVT-UG8 RVT-UG8 RVT-UG3 PRK09692 proA Feature: gene Location: 1-598 bp Ori: PAB88413.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4-118 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4-118 bp Feature: gene Location: 721-1071 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 847-1024 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 847-102 4 bp Feature: gene Location: 1480-2064 bp Feature: gene Location: 2128-2789 bp Ori: PAB88415.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2416-2773 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 416-2 773 bp Feature: gene Location: 2968-4152 bp Ori: PAB88416.1 Feature: domain Description: PRK09692 Location: 2974-4126 bp Feature: domain Description: PRK09692 Location: 2 974-412 6 bp Feature: gene Location: 4507-5760 bp Ori: PAB88417.1 Gene: proA Feature: domain Description: proA Location: 4534-5725 bp Feature: domain Description: proA Location: 4534-572 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: NIFT01000074.1 Escherichia coli strain SZM584-1 scaffold28, whole genome shotgun sequence (7842 bp)
Overview 1 RT 1: 2369-7667 bp Neighborhood of RT #1 [2369, 7672] PRK11114 RVT-GII GIIM PRK11097 Feature: gene Location: 2369-4519 bp Ori: PAB89801.1 Feature: domain Description: PRK11114 Location: 2429-4502 bp Feature: domain Description: PRK11114 Location: 2429-4502 bp Feature: gene Location: 4859-5038 bp Feature: gene Location: 5263-6615 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5659-6175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5659-6175 bp Feature: domain Description: GIIM Note: maturase Location: 6223-6454 bp Feature: domain Description: GIIM Note: maturase Location: 6223 -6454 bp Feature: gene Location: 6781-7187 bp Feature: gene Location: 7526-7672 bp Ori: PAB89803.1 Feature: domain Description: PRK11097 Location: 7538-7667 bp Feature: domain Description: PRK11097 Location: 753 8-7667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11114 (cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB), RVT-GII, GIIM (pfam08388), PRK11097 (cellulase)