myRT

myRT report for GCA_002270255.1_ASM227025v1

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Seq: NIFX01000075.1 Escherichia coli strain SZM334-1 SZM334-1_S72_L001_R1_001__paired__contig_76, whole genome shotgun sequence (32832 bp)
Overview 1 RT 1: 5934-10674 bp Neighborhood of RT #1 [5934, 10674] LldP PHA02517 RVT-GII GIIM Feature: gene Location: 5934-7487 bp Feature: domain Description: LldP Location: 5946-7479 bp Feature: domain Description: LldP Location: 5946-7479 bp Feature: gene Location: 7917-8405 bp Feature: domain Description: PHA02517 Location: 7920-8394 bp Feature: domain Description: PHA0251 7 Location: 7920-8394 bp Feature: gene Location: 8486-10009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8759-9491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8759-9491 bp Feature: domain Description: GIIM Note: maturase Location: 9566-9764 bp Feature: domain Description: GIIM Note: maturase Location: 9566-9764 bp Feature: gene Location: 10080-10388 bp Feature: gene Location: 10303-10674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LldP (COG1620), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NIFX01000048.1 Escherichia coli strain SZM334-1 SZM334-1_S72_L001_R1_001__paired__contig_49, whole genome shotgun sequence (98176 bp)
Overview 1 RT 1: 45080-50129 bp Neighborhood of RT #1 [45080, 50140] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 45080-46666 bp Feature: domain Description: prfC Location: 45098-46664 bp Feature: domain Description: prfC Location: 45098-46664 bp Feature: gene Location: 46886-47146 bp Feature: domain Description: PRK10597 Location: 46889-47129 bp Feature: domain Description: PRK10597 Location: 46889-4712 9 bp Feature: gene Location: 47506-49110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47797-48388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47797-48388 bp Feature: domain Description: TIR_2 Location: 48715-49003 bp Feature: domain Description: TIR_2 Location: 48715-49003 bp Feature: gene Location: 49249-49569 bp Feature: gene Location: 49556-50140 bp Feature: domain Description: Caudo_TAP Location: 49772-50129 bp Feature: domain Description: Caudo_TAP Location: 49772 -5012 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)