myRT

myRT report for GCA_002270415.1_ASM227041v1

Download annotations/find similar RTs

Seq: NNRI01000021.1 Mesorhizobium sophorae strain ICMP 19535 contig21, whole genome shotgun sequence (587624 bp)
Overview 1 RT 1: 222897-227336 bp 2 RT 2: 324446-329761 bp 3 RT 3: 353925-356201 bp 4 RT 4: 359737-364573 bp 5 RT 5: 420494-423967 bp 6 RT 6: 453145-458499 bp 7 RT 7: 529674-533492 bp 8 RT 8: 538310-541846 bp Neighborhood of RT #1 [222897, 227449] GGDEF RVT-GII IS285 HTH_37 Neighborhood of RT #2 [324446, 329802] ygfB_yecA COG3547 RVT-GII DUF772 DDE_Tnp_1 Neighborhood of RT #3 [353925, 356236] DDE_Tnp_1_4 RVT-GII GIIM HTH_Tnp_1 TnpB_IS66 Neighborhood of RT #4 [359737, 364689] COG3547 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #5 [420494, 423967] RVT-GII GIIM COG3547 Neighborhood of RT #6 [453145, 458501] INT_RitA_C_like INT_RitB_C_like xerC RVT-GII RVT-GII PRK07475 ectoine_eutD Neighborhood of RT #7 [529674, 533536] DDE_Tnp_1_4 RVT-GII GIIM PRK00711 Neighborhood of RT #8 [538310, 541857] DDE_Tnp_1_4 RVT-GII GIIM BKR_like_SDR_like Feature: gene Location: 222897-223682 bp Feature: domain Description: GGDEF Location: 223182-223638 bp Feature: domain Description: GGDEF Location: 2231 82-223638 bp Feature: gene Location: 223910-224122 bp Feature: gene Location: 224923-225576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225127-225325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251 27-225325 bp Feature: gene Location: 226251-226706 bp Feature: domain Description: IS285 Location: 226269-226668 bp Feature: domain Description: IS285 Location: 226269-226668 bp Feature: gene Location: 227069-227449 bp Feature: domain Description: HTH_37 Location: 227171-227336 bp Feature: domain Description: HTH_37 Location: 2271 71 -227336 bp Feature: gene Location: 324446-325093 bp Feature: domain Description: ygfB_yecA Location: 324530-324938 bp Feature: domain Description: ygfB_yecA Location: 324530-324938 bp Feature: gene Location: 325374-326297 bp Feature: domain Description: COG3547 Location: 325383-326247 bp Feature: domain Description: COG3547 Location: 325383-326247 bp Feature: gene Location: 326446-327921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326854-327544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326854-327544 bp Feature: gene Location: 328024-328665 bp Feature: gene Location: 328723-329802 bp Feature: domain Description: DUF772 Location: 328882-329101 bp Feature: domain Description: DUF772 Location: 328882-3291 01 bp Feature: domain Description: DDE_Tnp_1 Location: 329146-329761 bp Feature: domain Description: DDE_Tnp_1 Location: 3291 46-329761 bp Feature: gene Location: 353925-354437 bp Feature: domain Description: DDE_Tnp_1_4 Location: 354009-354348 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 354009-354348 bp Feature: gene Location: 354441-354578 bp Feature: gene Location: 354597-355496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354654-355119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354654-3551 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 355188-355401 bp Feature: domain Description: GIIM Note: maturase Location: 3551 88-355401 bp Feature: gene Location: 355521-355895 bp Feature: domain Description: HTH_Tnp_1 Location: 355575-355773 bp Feature: domain Description: HTH_Tnp_1 Location: 355575-355773 bp Feature: gene Location: 355892-356236 bp Feature: domain Description: TnpB_IS66 Location: 355916-356201 bp Feature: domain Description: TnpB_IS66 Location: 35591 6-356201 bp Feature: gene Location: 359737-360003 bp Feature: gene Location: 360295-361209 bp Feature: domain Description: COG3547 Location: 360304-361168 bp Feature: domain Description: COG3547 Location: 360304-361 1 68 bp Feature: gene Location: 361358-362833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361766-362456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 766-362456 bp Feature: gene Location: 363149-363667 bp Feature: domain Description: DDE_Tnp_IS66 Location: 363152-363374 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3631 52-363374 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 363398-363503 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 363398-363503 bp Feature: gene Location: 363715-364689 bp Feature: domain Description: LZ_Tnp_IS66 Location: 363739-363862 bp Feature: domain Description: LZ_Tnp_IS66 Location: 363739-363862 bp Feature: domain Description: zf-IS66 Location: 363877-364012 bp Feature: domain Description: zf-IS66 Location: 363877-36401 2 bp Feature: domain Description: DDE_Tnp_IS66 Location: 364057-364573 bp Feature: domain Description: DDE_Tnp_IS66 Location: 364057-364573 bp Feature: gene Location: 420494-420646 bp Feature: gene Location: 420899-421057 bp Feature: gene Location: 421116-422279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421233-421851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 233-421 851 bp Feature: domain Description: GIIM Note: maturase Location: 421899-422130 bp Feature: domain Description: GIIM Note: maturase Location: 421 899-4221 30 bp Feature: gene Location: 422670-423695 bp Feature: domain Description: COG3547 Location: 422676-423387 bp Feature: domain Description: COG3547 Location: 422676-423387 bp Feature: gene Location: 423734-423967 bp Feature: gene Location: 453145-453879 bp Feature: domain Description: INT_RitA_C_like Location: 453322-453856 bp Feature: domain Description: INT_RitA_C_like Location: 453322-453856 bp Feature: gene Location: 453876-454808 bp Feature: domain Description: INT_RitB_C_like Location: 454206-454782 bp Feature: domain Description: INT_RitB_C_like Location: 454206-454782 bp Feature: gene Location: 454805-455893 bp Feature: domain Description: xerC Location: 454838-455489 bp Feature: domain Description: xerC Location: 454838-455489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455657-455858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 455657-455858 bp Feature: gene Location: 455912-456496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456011-456107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45601 1 -4561 07 bp Feature: gene Location: 456584-457297 bp Feature: domain Description: PRK07475 Location: 456605-457274 bp Feature: domain Description: PRK07475 Location: 456605-457274 bp Feature: gene Location: 457314-458501 bp Feature: domain Description: ectoine_eutD Location: 457335-458499 bp Feature: domain Description: ectoine_eutD Location: 457335-458499 bp Feature: gene Location: 529674-530141 bp Feature: domain Description: DDE_Tnp_1_4 Location: 529758-530133 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 529758-5301 33 bp Feature: gene Location: 530145-530282 bp Feature: gene Location: 530301-531623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530589-531246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530589-531 246 bp Feature: domain Description: GIIM Note: maturase Location: 531315-531528 bp Feature: domain Description: GIIM Note: maturase Location: 531 31 5-531 528 bp Feature: gene Location: 531858-532130 bp Feature: gene Location: 532274-533536 bp Feature: domain Description: PRK00711 Location: 532304-533492 bp Feature: domain Description: PRK0071 1 Location: 532304-533492 bp Feature: gene Location: 538310-538822 bp Feature: domain Description: DDE_Tnp_1_4 Location: 538394-538733 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 538394-538733 bp Feature: gene Location: 538826-538963 bp Feature: gene Location: 538982-540304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539270-539927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539270-539927 bp Feature: domain Description: GIIM Note: maturase Location: 539996-540209 bp Feature: domain Description: GIIM Note: maturase Location: 539996-540209 bp Feature: gene Location: 540539-540811 bp Feature: gene Location: 541093-541857 bp Feature: domain Description: BKR_like_SDR_like Location: 541114-541846 bp Feature: domain Description: BKR_like_SDR_like Location: 541 1 1 4-541 846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GGDEF (TIGR00254), RVT-GII, IS285 (COG3328), HTH_37 (pfam13744), ygfB_yecA (TIGR02292), COG3547 (Transposase ), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_4 (pfam13701), GIIM (pfam08388)
HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), xerC (PRK01287), PRK07475 (hypothetical protein; Provisional)
ectoine_eutD (TIGR02993), PRK00711 (D-amino acid dehydrogenase), BKR_like_SDR_like (cd05344)