myRT

myRT report for GCA_002270545.1_ASM227054v1

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Seq: NQWC01000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UPM 260 H17142077401-2.R1_contig_58, whole genome shotgun sequence (24058 bp)
Overview 1 RT 1: 423-3579 bp Neighborhood of RT #1 [423, 3596] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 423-800 bp Feature: domain Description: DDE_Tnp_IS1 Location: 426-798 bp Feature: domain Description: DDE_Tnp_IS1 Location: 426-798 bp Feature: gene Location: 845-1120 bp Feature: domain Description: InsA Location: 848-1112 bp Feature: domain Description: InsA Location: 848-1 1 1 2 bp Feature: gene Location: 1272-2282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278-1890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 278-1 890 bp Feature: gene Location: 2394-2759 bp Feature: gene Location: 2913-3596 bp Feature: domain Description: PRK10276 Location: 3216-3579 bp Feature: domain Description: PRK1 0276 Location: 321 6-3579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DDE_Tnp_IS1 (pfam03400), InsA (COG3677)

Seq: NQWC01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UPM 260 H17142077401-2.R1_contig_7, whole genome shotgun sequence (81339 bp)
Overview 1 RT 1: 44638-50016 bp Neighborhood of RT #1 [44638, 50078] PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 44638-45825 bp Feature: domain Description: PRK10473 Location: 44641-45817 bp Feature: domain Description: PRK10473 Location: 44641-45817 bp Feature: gene Location: 46170-46379 bp Feature: gene Location: 46627-47562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46738-47323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46738-4732 3 bp Feature: gene Location: 47562-48524 bp Feature: gene Location: 48858-50078 bp Feature: domain Description: PRK09692 Location: 48867-50016 bp Feature: domain Description: PRK09692 Location: 48867-50016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)