myRT

myRT report for GCA_002271285.1_ASM227128v1

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Seq: NQLL01000069.1 Klebsiella pneumoniae strain NU-CRE265 NODE_69_length_1916_cov_87.1543_ID_7328, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 60-1795 bp Neighborhood of RT #1 [60, 1795] RVT-GII Feature: gene Location: 60-1544 bp Ori: PAC44483.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1 1 52 bp Feature: gene Location: 1544-1795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NQLL01000006.1 Klebsiella pneumoniae strain NU-CRE265 NODE_6_length_272195_cov_30.5486_ID_7202, whole genome shotgun sequence (272195 bp)
Overview 1 RT 1: 264601-271949 bp Neighborhood of RT #1 [264601, 271999] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 264601-265365 bp Ori: PAC47449.1 Feature: domain Description: FimC Location: 264646-265348 bp Feature: domain Description: FimC Location: 2 64646-2 65348 bp Feature: gene Location: 265412-268006 bp Ori: PAC47450.1 Feature: domain Description: FimD Location: 265454-267995 bp Feature: domain Description: FimD Location: 2 65454-2 67995 bp Feature: gene Location: 268003-270084 bp Ori: PAC47451.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268414-268858 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 68414-2 68858 bp Feature: gene Location: 270075-270534 bp Feature: domain Description: Integrase_1 Location: 270096-270363 bp Feature: domain Description: Integrase_1 Location: 2 70096-2 70363 bp Feature: gene Location: 270761-271999 bp Feature: domain Description: PRK09692 Location: 270767-271949 bp Feature: domain Description: PRK09692 Location: 2 70767-2 71949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)

Seq: NQLL01000055.1 Klebsiella pneumoniae strain NU-CRE265 NODE_55_length_4592_cov_14.3767_ID_7300, whole genome shotgun sequence (4592 bp)
Overview 1 RT 1: 933-4192 bp Neighborhood of RT #1 [933, 4192] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 933-2435 bp Ori: PAC44520.1 Feature: domain Description: PRK13889 Location: 936-1515 bp Feature: domain Description: PRK13 889 Location: 93 6-1515 bp Feature: gene Location: 2512-3612 bp Ori: PAC44521.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2653-3205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2653 -3 205 bp Feature: gene Location: 3605-3886 bp Ori: PAC44522.1 Feature: domain Description: HTH_XRE Location: 3620-3785 bp Feature: domain Description: HTH_XRE Location: 3 620-3 785 bp Feature: gene Location: 3977-4192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: NQLL01000033.1 Klebsiella pneumoniae strain NU-CRE265 NODE_33_length_24179_cov_49.119_ID_7256, whole genome shotgun sequence (24179 bp)
Overview 1 RT 1: 14151-17321 bp Neighborhood of RT #1 [14151, 17335] RVT-GII PRK10276 Feature: gene Location: 14151-14363 bp Feature: gene Location: 14533-14763 bp Feature: gene Location: 14997-16505 bp Ori: PAC44803.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15399-16113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15399-16113 bp Feature: gene Location: 16505-16756 bp Feature: gene Location: 16910-17335 bp Ori: PAC44805.1 Feature: domain Description: PRK10276 Location: 16913-17321 bp Feature: domain Description: PRK10276 Location: 16913-17321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)