myRT

myRT report for GCA_002272965.1_ASM227296v1

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Seq: NQMH01000001.1 Parabacteroides sp. AT13 AT13_contig1, whole genome shotgun sequence (3389137 bp)
Overview 1 RT 1: 4346-7891 bp 2 RT 2: 54263-57746 bp 3 RT 3: 335743-339677 bp 4 RT 4: 672510-675769 bp 5 RT 5: 2867484-2872595 bp Neighborhood of RT #1 [4346, 7905] DUF4133 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Neighborhood of RT #2 [54263, 57823] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Neighborhood of RT #3 [335743, 339677] MobC Toprim_2 RVT-GII Intron_maturas2 Neighborhood of RT #4 [672510, 675795] HTH_XRE RVT-Retrons RhaT Lrp Neighborhood of RT #5 [2867484, 2872621] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 RteC Feature: gene Location: 4346-4642 bp Feature: domain Description: DUF4133 Location: 4388-4565 bp Feature: domain Description: DUF41 33 Location: 4388-4565 bp Feature: gene Location: 4655-4848 bp Feature: gene Location: 4873-6684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5137-5959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 37-5959 bp Feature: domain Description: Intron_maturas2 Location: 6148-6358 bp Feature: domain Description: Intron_maturas2 Location: 61 48-6358 bp Feature: domain Description: HNHc Note: nucleases Location: 6508-6613 bp Feature: domain Description: HNHc Note: nucleases Location: 6508-661 3 bp Feature: gene Location: 7226-7504 bp Feature: domain Description: DUF4134 Location: 7286-7487 bp Feature: domain Description: DUF41 34 Location: 7286-7487 bp Feature: gene Location: 7579-7905 bp Feature: domain Description: DUF4134 Location: 7600-7891 bp Feature: domain Description: DUF41 34 Location: 7600-7891 bp Feature: gene Location: 54263-54589 bp Feature: domain Description: DUF4134 Location: 54284-54575 bp Feature: domain Description: DUF41 34 Location: 54284-54575 bp Feature: gene Location: 54664-54942 bp Feature: domain Description: DUF4134 Location: 54724-54925 bp Feature: domain Description: DUF41 34 Location: 54724-54925 bp Feature: gene Location: 55484-57295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55748-56570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55748-56570 bp Feature: domain Description: Intron_maturas2 Location: 56759-56969 bp Feature: domain Description: Intron_maturas2 Location: 56759-56969 bp Feature: domain Description: HNHc Note: nucleases Location: 57119-57224 bp Feature: domain Description: HNHc Note: nucleases Location: 571 1 9-57224 bp Feature: gene Location: 57320-57514 bp Feature: domain Description: DUF4134 Location: 57410-57500 bp Feature: domain Description: DUF41 34 Location: 5741 0-57500 bp Feature: gene Location: 57527-57823 bp Feature: domain Description: DUF4133 Location: 57569-57746 bp Feature: domain Description: DUF41 33 Location: 57569-57746 bp Feature: gene Location: 335743-336126 bp Feature: domain Description: MobC Location: 335959-336088 bp Feature: domain Description: MobC Location: 335959-336088 bp Feature: gene Location: 336273-337151 bp Feature: domain Description: Toprim_2 Location: 336807-337086 bp Feature: domain Description: Toprim_2 Location: 336807-337086 bp Feature: gene Location: 337141-338949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337405-338227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337405-338227 bp Feature: domain Description: Intron_maturas2 Location: 338305-338608 bp Feature: domain Description: Intron_maturas2 Location: 338305-338608 bp Feature: gene Location: 338984-339404 bp Feature: gene Location: 339510-339677 bp Feature: gene Location: 672510-672740 bp Feature: gene Location: 672768-673073 bp Feature: domain Description: HTH_XRE Location: 672780-672942 bp Feature: domain Description: HTH_XRE Location: 672780-672942 bp Feature: gene Location: 673070-673930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 673220-673751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 673220-673751 bp Feature: gene Location: 674286-675158 bp Feature: domain Description: RhaT Location: 674322-675153 bp Feature: domain Description: RhaT Location: 674322-6751 53 bp Feature: gene Location: 675322-675795 bp Feature: domain Description: Lrp Location: 675328-675769 bp Feature: domain Description: Lrp Location: 675328-675769 bp Feature: gene Location: 2867484-2868149 bp Feature: gene Location: 2868379-2869539 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2868424-2868664 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2868424-2868664 bp Feature: domain Description: Phage_int_SAM_5 Location: 2868718-2869018 bp Feature: domain Description: Phage_int_SAM_5 Location: 286871 8-286901 8 bp Feature: domain Description: INTN1_C_like Location: 2869063-2869522 bp Feature: domain Description: INTN1 _C_like Location: 2869063-2869522 bp Feature: gene Location: 2870090-2871898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2870354-2871176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2870354-2871 1 76 bp Feature: domain Description: Intron_maturas2 Location: 2871302-2871557 bp Feature: domain Description: Intron_maturas2 Location: 2871 302-2871 557 bp Feature: gene Location: 2872100-2872471 bp Feature: gene Location: 2872496-2872621 bp Feature: domain Description: RteC Location: 2872499-2872595 bp Feature: domain Description: RteC Location: 2872499-2872595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), MobC (pfam05713), Toprim_2 (pfam13155), HTH_XRE (smart00530), RVT-Retrons, RhaT (TIGR00776)
Lrp (COG1522), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RteC (pfam09357)

Seq: NQMH01000003.1 Parabacteroides sp. AT13 AT13_contig3, whole genome shotgun sequence (55806 bp)
Overview 1 RT 1: 5701-9247 bp Neighborhood of RT #1 [5701, 9261] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 5701-5997 bp Feature: domain Description: DUF4133 Location: 5743-5920 bp Feature: domain Description: DUF4133 Location: 5743-592 0 bp Feature: gene Location: 6010-6204 bp Feature: domain Description: DUF4134 Location: 6100-6190 bp Feature: domain Description: DUF4134 Location: 6100-6190 bp Feature: gene Location: 6229-8040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6493-7315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6493-7315 bp Feature: domain Description: Intron_maturas2 Location: 7504-7714 bp Feature: domain Description: Intron_maturas2 Location: 7504-7714 bp Feature: domain Description: HNHc Note: nucleases Location: 7864-7969 bp Feature: domain Description: HNHc Note: nucleases Location: 7864-7969 bp Feature: gene Location: 8582-8860 bp Feature: domain Description: DUF4134 Location: 8642-8843 bp Feature: domain Description: DUF4134 Location: 8642 -8843 bp Feature: gene Location: 8935-9261 bp Feature: domain Description: DUF4134 Location: 8956-9247 bp Feature: domain Description: DUF4134 Location: 8956-92 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NQMH01000002.1 Parabacteroides sp. AT13 AT13_contig2, whole genome shotgun sequence (1585756 bp)
Overview 1 RT 1: 1-2585 bp Neighborhood of RT #1 [1, 2599] RVT-GII DUF4134 DUF4134 Feature: gene Location: 1-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-1087 bp Feature: gene Location: 1920-2198 bp Feature: domain Description: DUF4134 Location: 1980-2181 bp Feature: domain Description: DUF413 4 Location: 1980-2181 bp Feature: gene Location: 2273-2599 bp Feature: domain Description: DUF4134 Location: 2294-2585 bp Feature: domain Description: DUF413 4 Location: 2294-2585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4134 (pfam13572)