myRT

myRT report for GCA_002278435.1_ASM227843v1

Download annotations/find similar RTs

Seq: NOIX01000020.1 Vibrio vulnificus strain WAPHLVBRA00011 NODE_20_length_57955_cov_47.1643, whole genome shotgun sequence (57955 bp)
Overview 1 RT 1: 17500-19522 bp Neighborhood of RT #1 [17500, 19677] HTH_XRE RVT-Retrons ParE arc_metj Feature: gene Location: 17500-17685 bp Feature: gene Location: 17728-18024 bp Feature: domain Description: HTH_XRE Location: 17746-17914 bp Feature: domain Description: HTH_XRE Location: 1 7746-1 791 4 bp Feature: gene Location: 18011-18970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18173-18659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 73-1 8659 bp Feature: gene Location: 19118-19396 bp Feature: domain Description: ParE Location: 19124-19391 bp Feature: domain Description: ParE Location: 1 91 24-1 9391 bp Feature: gene Location: 19393-19677 bp Feature: domain Description: arc_metj Location: 19405-19522 bp Feature: domain Description: arc_metj Location: 1 9405-1 9522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, ParE (COG3668), arc_metj (LOAD_arc_metj)

Seq: NOIX01000016.1 Vibrio vulnificus strain WAPHLVBRA00011 NODE_16_length_89114_cov_52.7517, whole genome shotgun sequence (89114 bp)
Overview 1 RT 1: 82673-87178 bp Neighborhood of RT #1 [82673, 87348] COG4190 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 82673-82956 bp Feature: gene Location: 83036-83422 bp Feature: domain Description: COG4190 Location: 83051-83381 bp Feature: domain Description: COG4190 Location: 83051-83381 bp Feature: gene Location: 84078-85001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84180-84762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84180-84762 bp Feature: gene Location: 84994-86676 bp Feature: domain Description: COG3950 Location: 85222-86587 bp Feature: domain Description: COG3950 Location: 852 2 2 -86587 bp Feature: gene Location: 86680-87348 bp Feature: domain Description: TIGR02646 Location: 86746-87178 bp Feature: domain Description: TIGR02 646 Location: 86746-87178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4190 (Predicted transcriptional regulator ), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)