myRT

myRT report for GCA_002282095.1_ASM228209v1

Download annotations/find similar RTs

Seq: NCIO01000119.1 Alphaproteobacteria bacterium 17-39-52 lw04302015_17_scaffold_4421, whole genome shotgun sequence (3422 bp)
Overview 1 RT 1: 164-1042 bp Neighborhood of RT #1 [164, 1053] RVT-GII DDE_3 DDE_3 Feature: gene Location: 164-388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185-296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85-296 bp Feature: gene Location: 579-818 bp Feature: domain Description: DDE_3 Location: 582-750 bp Feature: domain Description: DDE_3 Location: 582-750 bp Feature: gene Location: 832-1053 bp Feature: domain Description: DDE_3 Location: 835-1042 bp Feature: domain Description: DDE_3 Location: 835-1 042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358)

Seq: NCIO01000014.1 Alphaproteobacteria bacterium 17-39-52 lw04302015_17_scaffold_270, whole genome shotgun sequence (27584 bp)
Overview 1 RT 1: 73-4217 bp Neighborhood of RT #1 [73, 4228] recomb_XerD RVT-GII rve PRK08181 Feature: gene Location: 73-675 bp Feature: domain Description: recomb_XerD Location: 370-673 bp Feature: domain Description: recomb_XerD Location: 370-673 bp Feature: gene Location: 858-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1050-1443 bp Feature: gene Location: 1957-3483 bp Feature: domain Description: rve Location: 2344-2737 bp Feature: domain Description: rve Location: 2 344-2 737 bp Feature: gene Location: 3476-4228 bp Feature: domain Description: PRK08181 Location: 3491-4217 bp Feature: domain Description: PRK08181 Location: 3491-42 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), PRK08181 (transposase; Validated), recomb_XerD (TIGR02225), RVT-GII

Seq: NCIO01000098.1 Alphaproteobacteria bacterium 17-39-52 lw04302015_17_scaffold_2008, whole genome shotgun sequence (7823 bp)
Overview 1 RT 1: 6023-7500 bp Neighborhood of RT #1 [6023, 7712] T_den_put_tspse PDDEXK_2 RVT-GII GIIM Feature: gene Location: 6023-6490 bp Feature: domain Description: T_den_put_tspse Location: 6026-6458 bp Feature: domain Description: T_den_put_tspse Location: 6026-6458 bp Feature: gene Location: 6532-6801 bp Feature: domain Description: PDDEXK_2 Location: 6559-6799 bp Feature: domain Description: PDDEXK_2 Location: 6559-6799 bp Feature: gene Location: 6948-7712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6951-7212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6951-7212 bp Feature: domain Description: GIIM Note: maturase Location: 7269-7500 bp Feature: domain Description: GIIM Note: maturase Location: 7269-7500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), PDDEXK_2 (pfam12784), RVT-GII, GIIM (pfam08388)

Seq: NCIO01000060.1 Alphaproteobacteria bacterium 17-39-52 lw04302015_17_scaffold_917, whole genome shotgun sequence (15571 bp)
Overview 1 RT 1: 85-8348 bp Neighborhood of RT #1 [85, 8365] RVT_N RVT-GII TPR_12 TIR_2 AAA_16 AAA_16 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_8 TPR_12 TPR_8 TPR_12 TPR_12 TPR_12 Feature: gene Location: 85-831 bp Feature: RT Description: RVT_N Location: 139-376 bp Feature: RT Description: RVT_N Location: 139-376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 27-805 bp Feature: gene Location: 1779-2165 bp Feature: domain Description: TPR_12 Location: 1785-1983 bp Feature: domain Description: TPR_12 Location: 1785-1983 bp Feature: gene Location: 2339-8365 bp Feature: domain Description: TIR_2 Location: 2591-2951 bp Feature: domain Description: TIR_2 Location: 2591-2951 bp Feature: domain Description: AAA_16 Location: 3257-3455 bp Feature: domain Description: AAA_16 Location: 3257-34 55 bp Feature: domain Description: AAA_16 Location: 4664-4796 bp Feature: domain Description: AAA_16 Location: 4 664 -4 796 bp Feature: domain Description: TPR_12 Location: 5771-5978 bp Feature: domain Description: TPR_12 Location: 5771-5978 bp Feature: domain Description: TPR_12 Location: 6008-6230 bp Feature: domain Description: TPR_12 Location: 6008-6230 bp Feature: domain Description: TPR_12 Location: 6260-6473 bp Feature: domain Description: TPR_12 Location: 6260-64 73 bp Feature: domain Description: TPR_12 Location: 6509-6734 bp Feature: domain Description: TPR_12 Location: 6509-6734 bp Feature: domain Description: TPR_12 Location: 6761-6944 bp Feature: domain Description: TPR_12 Location: 6761-694 4 bp Feature: domain Description: TPR_12 Location: 7055-7193 bp Feature: domain Description: TPR_12 Location: 7055-7193 bp Feature: domain Description: TPR_8 Location: 7268-7355 bp Feature: domain Description: TPR_8 Location: 7268-7355 bp Feature: domain Description: TPR_12 Location: 7388-7508 bp Feature: domain Description: TPR_12 Location: 7388-7508 bp Feature: domain Description: TPR_8 Location: 7544-7634 bp Feature: domain Description: TPR_8 Location: 754 4 -7634 bp Feature: domain Description: TPR_12 Location: 7661-7886 bp Feature: domain Description: TPR_12 Location: 7661-7886 bp Feature: domain Description: TPR_12 Location: 7913-8138 bp Feature: domain Description: TPR_12 Location: 7913-8138 bp Feature: domain Description: TPR_12 Location: 8165-8348 bp Feature: domain Description: TPR_12 Location: 8165-834 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), TIR_2 (pfam13676), AAA_16 (pfam13191), TPR_8 (pfam13181), RVT_N (pfam13655), RVT-GII

Seq: NCIO01000023.1 Alphaproteobacteria bacterium 17-39-52 lw04302015_17_scaffold_393, whole genome shotgun sequence (22140 bp)
Overview 1 RT 1: 10-1633 bp Neighborhood of RT #1 [10, 1644] RVT-GII GIIM antidote_HigA PIN_Pae0151-like Feature: gene Location: 10-780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-265 bp Feature: domain Description: GIIM Note: maturase Location: 319-550 bp Feature: domain Description: GIIM Note: maturase Location: 319-5 5 0 bp Feature: gene Location: 842-1150 bp Feature: domain Description: antidote_HigA Location: 887-1076 bp Feature: domain Description: antidote_HigA Location: 887-1076 bp Feature: gene Location: 1231-1644 bp Feature: domain Description: PIN_Pae0151-like Location: 1246-1633 bp Feature: domain Description: PIN_Pae015 1-like Location: 1246-1633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_Pae0151-like (cd09873), antidote_HigA (TIGR02607)