myRT

myRT report for GCA_002283275.1_ASM228327v1

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Seq: NQWV01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTR350 NCTR_350_contig_36, whole genome shotgun sequence (128239 bp)
Overview 1 RT 1: 59293-65421 bp Neighborhood of RT #1 [59293, 65603] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 59293-61275 bp Ori: PAP52333.1 Feature: domain Description: PRK05658 Location: 59431-61273 bp Feature: domain Description: PRK05658 Location: 59431 -61 273 bp Feature: gene Location: 61399-61905 bp Ori: PAP52334.1 Feature: domain Description: PRK10201 Location: 61402-61900 bp Feature: domain Description: PRK1 0201 Location: 61 402-61 900 bp Feature: gene Location: 62229-62855 bp Ori: PAP52335.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 62232-62667 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 62232-62667 bp Feature: gene Location: 62963-63148 bp Feature: gene Location: 63900-65603 bp Ori: PAP52337.1 Feature: domain Description: 5 Location: 65127-65421 bp Feature: domain Description: 5 Location: 651 27-65421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)

Seq: NQWV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTR350 NCTR_350_contig_1, whole genome shotgun sequence (49317 bp)
Overview 1 RT 1: 2258-5320 bp Neighborhood of RT #1 [2258, 5320] TIR-like RVT-Retrons InsE Feature: gene Location: 2258-2467 bp Feature: gene Location: 2533-3372 bp Ori: PAP56989.1 Feature: domain Description: TIR-like Location: 2938-3292 bp Feature: domain Description: TIR-like Location: 2 938-32 92 bp Feature: gene Location: 3422-4381 bp Ori: PAP56990.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3602-4124 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3602 -412 4 bp Feature: gene Location: 4412-4639 bp Feature: gene Location: 5071-5320 bp Ori: PAP56992.1 Feature: domain Description: InsE Location: 5080-5320 bp Feature: domain Description: InsE Location: 5080-532 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)