myRT

myRT report for GCA_002283505.1_ASM228350v1

Download annotations/find similar RTs

Seq: MVPN01000103.1 Escherichia coli strain GMR-RA-229.16 contig_90_1, whole genome shotgun sequence (25630 bp)
Overview 1 RT 1: 16192-22496 bp Neighborhood of RT #1 [16192, 22501] MFS_ExuT_GudP_like RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 16192-17541 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 16237-17494 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 6237-1 7494 bp Feature: gene Location: 17896-18240 bp Feature: gene Location: 19685-20119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19877-20093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9877-20093 bp Feature: gene Location: 20137-20943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20140-20503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 40-20503 bp Feature: domain Description: GIIM Note: maturase Location: 20551-20773 bp Feature: domain Description: GIIM Note: maturase Location: 20551 -20773 bp Feature: gene Location: 21019-21342 bp Feature: gene Location: 21470-22501 bp Feature: domain Description: LacI Location: 21512-21647 bp Feature: domain Description: LacI Location: 21 51 2-21 647 bp Feature: domain Description: PBP1_GntR Location: 21686-22496 bp Feature: domain Description: PBP1 _GntR Location: 21 686-22496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ExuT_GudP_like (cd17319), RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: MVPN01000108.1 Escherichia coli strain GMR-RA-229.16 contig_95_1, whole genome shotgun sequence (31429 bp)
Overview 1 RT 1: 9075-14437 bp Neighborhood of RT #1 [9075, 14439] PLDc_N_DEXD_c DEXDc_RapA SF2_C_SNF HTH_17 RVT-GII YeeP Feature: gene Location: 9075-12341 bp Feature: domain Description: PLDc_N_DEXD_c Location: 9090-9501 bp Feature: domain Description: PLDc_N_DEXD_c Location: 9090-9501 bp Feature: domain Description: DEXDc_RapA Location: 9762-10329 bp Feature: domain Description: DEXDc_RapA Location: 9762 -1032 9 bp Feature: domain Description: SF2_C_SNF Location: 10908-11502 bp Feature: domain Description: SF2 _C_SNF Location: 10908-11502 bp Feature: gene Location: 12356-12535 bp Feature: domain Description: HTH_17 Location: 12374-12518 bp Feature: domain Description: HTH_17 Location: 12 374-12 518 bp Feature: gene Location: 12824-13136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12830-12920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 830-12 92 0 bp Feature: gene Location: 13096-13338 bp Feature: gene Location: 13564-14439 bp Feature: domain Description: YeeP Location: 13579-14437 bp Feature: domain Description: YeeP Location: 13579-14437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, YeeP (COG3596), PLDc_N_DEXD_c (cd10311), DEXDc_RapA (cd18011), SF2_C_SNF (cd18793)