myRT

myRT report for GCA_002283545.1_ASM228354v1

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Seq: MVPQ01000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-1454 contig_47_1, whole genome shotgun sequence (38856 bp)
Overview 1 RT 1: 29396-35701 bp Neighborhood of RT #1 [29396, 35703] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 29396-31096 bp Ori: PAR15638.1 Feature: domain Description: 5 Location: 30620-30914 bp Feature: domain Description: 5 Location: 30620-3091 4 bp Feature: gene Location: 31848-32033 bp Feature: gene Location: 32141-32767 bp Ori: PAR15632.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 32144-32579 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 321 44-32579 bp Feature: gene Location: 33091-33597 bp Ori: PAR15633.1 Feature: domain Description: PRK10201 Location: 33094-33592 bp Feature: domain Description: PRK1 0201 Location: 33094-33592 bp Feature: gene Location: 33721-35703 bp Ori: PAR15634.1 Feature: domain Description: PRK05658 Location: 33859-35701 bp Feature: domain Description: PRK05658 Location: 33859-35701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: MVPQ01000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain GMR-S-1454 contig_98_1, whole genome shotgun sequence (48737 bp)
Overview 1 RT 1: 113-3991 bp Neighborhood of RT #1 [113, 3999] RVT-Retrons PRK10473 Feature: gene Location: 113-1075 bp Feature: gene Location: 1141-2010 bp Ori: PAR10811.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1186-1771 bp Feature: gene Location: 2258-2467 bp Feature: gene Location: 2812-3999 bp Ori: PAR10771.1 Feature: domain Description: PRK10473 Location: 2815-3991 bp Feature: domain Description: PRK10473 Location: 2 815-3991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)