myRT

myRT report for GCA_002283675.1_ASM228367v1

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Seq: MVPJ01000063.1 Escherichia coli strain GMR-RA-402.16 contig_63, whole genome shotgun sequence (12579 bp)
Overview 1 RT 1: 203-2451 bp Neighborhood of RT #1 [203, 2451] RVT-GII GIIM Feature: gene Location: 203-1726 bp Ori: PAQ72048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-1 208 bp Feature: domain Description: GIIM Note: maturase Location: 1283-1481 bp Feature: domain Description: GIIM Note: maturase Location: 1 283-1 481 bp Feature: gene Location: 1680-2105 bp Feature: gene Location: 2020-2451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MVPJ01000012.1 Escherichia coli strain GMR-RA-402.16 contig_12, whole genome shotgun sequence (119057 bp)
Overview 1 RT 1: 29462-35840 bp Neighborhood of RT #1 [29462, 35860] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 29462-30418 bp Ori: PAQ77023.1 Feature: domain Description: XdhC Location: 29540-30395 bp Feature: domain Description: XdhC Location: 2 9540-30395 bp Feature: gene Location: 30397-30807 bp Ori: PAQ77024.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 30469-30781 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 30469-30781 bp Feature: gene Location: 31350-33368 bp Ori: PAQ77025.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 31923-32376 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3192 3-32 376 bp Feature: gene Location: 33359-34636 bp Ori: PAQ77026.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 33647-34142 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 33647-34142 bp Feature: gene Location: 35031-35303 bp Ori: PAQ77027.1 Feature: domain Description: PRK09678 Location: 35040-35205 bp Feature: domain Description: PRK09678 Location: 35040-352 05 bp Feature: gene Location: 35309-35860 bp Ori: PAQ77028.1 Feature: domain Description: Psu Location: 35330-35840 bp Feature: domain Description: Psu Location: 35330-35840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)