myRT

myRT report for GCA_002283715.1_ASM228371v1

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Seq: MVPL01000187.1 Escherichia coli strain GMR-RA-372.16 contig_157_1, whole genome shotgun sequence (14879 bp)
Overview 1 RT 1: 6967-11567 bp Neighborhood of RT #1 [6967, 11572] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 6967-7311 bp Feature: gene Location: 7729-7992 bp Feature: gene Location: 8756-9190 bp Ori: PAQ80917.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8948-9164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8948-91 64 bp Feature: gene Location: 9208-9816 bp Ori: PAQ80922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9211-9574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 1 -9574 bp Feature: domain Description: GIIM Note: maturase Location: 9622-9814 bp Feature: domain Description: GIIM Note: maturase Location: 9622-981 4 bp Feature: gene Location: 10090-10413 bp Feature: gene Location: 10541-11572 bp Ori: PAQ80918.1 Feature: domain Description: LacI Location: 10583-10718 bp Feature: domain Description: LacI Location: 1 0583-1 071 8 bp Feature: domain Description: PBP1_GntR Location: 10757-11567 bp Feature: domain Description: PBP1 _GntR Location: 1 0757-1 1 567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: MVPL01000099.1 Escherichia coli strain GMR-RA-372.16 contig_84_1, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: PAQ85217.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MVPL01000029.1 Escherichia coli strain GMR-RA-372.16 contig_24_1, whole genome shotgun sequence (7661 bp)
Overview 1 RT 1: 154-2475 bp Neighborhood of RT #1 [154, 2475] RVT-UG17 SLATT_5 Feature: gene Location: 154-1524 bp Ori: PAQ88408.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 382-988 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 82-988 bp Feature: gene Location: 1502-2053 bp Ori: PAQ88409.1 Feature: domain Description: SLATT_5 Location: 1511-2024 bp Feature: domain Description: SLATT_5 Location: 1511-2024 bp Feature: gene Location: 2298-2475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: MVPL01000093.1 Escherichia coli strain GMR-RA-372.16 contig_78_1, whole genome shotgun sequence (106388 bp)
Overview 1 RT 1: 93459-97742 bp Neighborhood of RT #1 [93459, 97750] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 93459-94364 bp Feature: gene Location: 94338-94625 bp Feature: gene Location: 94850-95389 bp Ori: PAQ85687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95180-95258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95180-95258 bp Feature: gene Location: 95417-95938 bp Ori: PAQ85688.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95423-95705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954 23-95705 bp Feature: domain Description: GIIM Note: maturase Location: 95753-95933 bp Feature: domain Description: GIIM Note: maturase Location: 95753-95933 bp Feature: gene Location: 96260-96448 bp Feature: gene Location: 96521-97750 bp Ori: PAQ85690.1 Feature: domain Description: YesM Location: 97001-97742 bp Feature: domain Description: YesM Location: 97001-9774 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)