myRT

myRT report for GCA_002283775.1_ASM228377v1

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Seq: MVPO01000004.1 Escherichia coli strain GMR-RB-634 contig_2_2, whole genome shotgun sequence (151116 bp)
Overview 1 RT 1: 99077-105186 bp Neighborhood of RT #1 [99077, 105245] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 99077-99997 bp Ori: PAR07168.1 Feature: domain Description: AbiEii Location: 99119-99860 bp Feature: domain Description: AbiEii Location: 991 1 9-99860 bp Feature: gene Location: 99984-100787 bp Ori: PAR07169.1 Feature: domain Description: AbiEi_3_N Location: 100017-100278 bp Feature: domain Description: AbiEi_3_N Location: 1 0001 7-1 00278 bp Feature: domain Description: AbiEi_3 Location: 100290-100746 bp Feature: domain Description: AbiEi_3 Location: 1 00290-1 00746 bp Feature: gene Location: 101082-104291 bp Ori: PAR07170.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 101610-102099 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 01 61 0-1 02099 bp Feature: domain Description: nitrilase Location: 103605-104202 bp Feature: domain Description: nitrilase Location: 1 03605-1 04202 bp Feature: gene Location: 104638-105108 bp Feature: gene Location: 105105-105245 bp Ori: PAR07172.1 Feature: domain Description: SfsB Location: 105114-105186 bp Feature: domain Description: SfsB Location: 1 051 1 4-1 051 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: MVPO01000126.1 Escherichia coli strain GMR-RB-634 contig_115_1, whole genome shotgun sequence (2397 bp)
Overview 1 RT 1: 83-1715 bp Neighborhood of RT #1 [83, 1750] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1750 bp Ori: PAQ98593.1 Feature: domain Description: RVT_N Location: 131-368 bp Feature: domain Description: RVT_N Location: 131-368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1061 bp Feature: domain Description: GIIM Note: maturase Location: 1112-1346 bp Feature: domain Description: GIIM Note: maturase Location: 1112 -1346 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Feature: domain Description: HNHc Note: nucleases Location: 1556-1715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MVPO01000020.1 Escherichia coli strain GMR-RB-634 contig_15_1, whole genome shotgun sequence (89190 bp)
Overview 1 RT 1: 81909-88745 bp Neighborhood of RT #1 [81909, 88867] CAD1 PRK09692 RVT-UG5 nitrilase Ogr_Delta Feature: gene Location: 81909-82928 bp Ori: PAR03969.1 Feature: domain Description: CAD1 Location: 81927-82917 bp Feature: domain Description: CAD1 Location: 81927-82917 bp Feature: gene Location: 83372-84622 bp Ori: PAR03970.1 Feature: domain Description: PRK09692 Location: 83381-84581 bp Feature: domain Description: PRK09692 Location: 83 3 81-84581 bp Feature: gene Location: 84688-87573 bp Ori: PAR03971.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85165-85696 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 85165-85696 bp Feature: domain Description: nitrilase Location: 86866-87499 bp Feature: domain Description: nitrilase Location: 86866-87499 bp Feature: gene Location: 87570-88259 bp Feature: gene Location: 88595-88867 bp Ori: PAR03973.1 Feature: domain Description: Ogr_Delta Location: 88607-88745 bp Feature: domain Description: Ogr_Delta Location: 88607-88745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAD1 (cd05283), PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Ogr_Delta (pfam04606)