myRT

myRT report for GCA_002284025.1_ASM228402v1

Download annotations/find similar RTs

Seq: NMSO01000058.1 Vibrio metoecus strain OYP8G12 Vm_OYP8G12_Contig_58, whole genome shotgun sequence (4178 bp)
Overview 1 RT 1: 601-4178 bp Neighborhood of RT #1 [601, 4178] DUF3265 RVT-UG7 Mrr_cat Feature: gene Location: 601-1260 bp Feature: gene Location: 1287-1415 bp Ori: PAR43604.1 Feature: domain Description: DUF3265 Location: 1332-1413 bp Feature: domain Description: DUF3265 Location: 1 332-1 41 3 bp Feature: gene Location: 1405-2919 bp Ori: PAR43605.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1777-2203 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 777-2203 bp Feature: gene Location: 3058-3816 bp Ori: PAR43606.1 Feature: domain Description: Mrr_cat Location: 3433-3796 bp Feature: domain Description: Mrr_cat Location: 3433-3796 bp Feature: gene Location: 4090-4178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3265 (pfam11665), RVT-UG7, Mrr_cat (pfam04471)

Seq: NMSO01000008.1 Vibrio metoecus strain OYP8G12 Vm_OYP8G12_Contig_8, whole genome shotgun sequence (257828 bp)
Overview 1 RT 1: 156121-160534 bp Neighborhood of RT #1 [156121, 160536] umuC PRK10276 RVT-Retrons HTH_XRE PinE Feature: gene Location: 156121-157377 bp Ori: PAR46889.1 Feature: domain Description: umuC Location: 156124-157372 bp Feature: domain Description: umuC Location: 15612 4-157372 bp Feature: gene Location: 157377-157784 bp Ori: PAR46890.1 Feature: domain Description: PRK10276 Location: 157389-157749 bp Feature: domain Description: PRK102 76 Location: 157389-157749 bp Feature: gene Location: 158027-158980 bp Ori: PAR46891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 158216-158750 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1582 16-158750 bp Feature: gene Location: 158958-159266 bp Ori: PAR46892.1 Feature: domain Description: HTH_XRE Location: 158970-159135 bp Feature: domain Description: HTH_XRE Location: 158970-159135 bp Feature: gene Location: 159970-160536 bp Ori: PAR46893.1 Feature: domain Description: PinE Location: 159973-160534 bp Feature: domain Description: PinE Location: 159973-160534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-Retrons, HTH_XRE (smart00530), PinE (COG1961)