myRT

myRT report for GCA_002284325.1_ASM228432v1

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Seq: NMTH01000011.1 Vibrio cholerae strain OYP4G08 Vc_OYP4G08_Contig_11, whole genome shotgun sequence (284888 bp)
Overview 1 RT 1: 190686-198340 bp Neighborhood of RT #1 [190686, 198348] PRK05096 RVT-Retrons Trypsin_2 PRK10590 PRK12489 Feature: gene Location: 190686-191063 bp Feature: gene Location: 191228-192271 bp Ori: PAS13553.1 Feature: domain Description: PRK05096 Location: 191231-192263 bp Feature: domain Description: PRK05096 Location: 1 91 231 -1 92263 bp Feature: gene Location: 192799-194553 bp Ori: PAS13554.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 193009-193612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 93009-1 9361 2 bp Feature: domain Description: Trypsin_2 Location: 194005-194437 bp Feature: domain Description: Trypsin_2 Location: 1 94005-1 94437 bp Feature: gene Location: 195436-196830 bp Ori: PAS13555.1 Feature: domain Description: PRK10590 Location: 195439-196783 bp Feature: domain Description: PRK1 0590 Location: 1 95439-1 96783 bp Feature: gene Location: 197020-198348 bp Ori: PAS13556.1 Feature: domain Description: PRK12489 Location: 197023-198340 bp Feature: domain Description: PRK1 2489 Location: 1 97023-1 98340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05096 (guanosine 5'-monophosphate oxidoreductase; Provisional), RVT-Retrons, Trypsin_2 (pfam13365), PRK10590 (ATP-dependent RNA helicase RhlE; Provisional), PRK12489 (anaerobic C4-dicarboxylate transporter; Reviewed)

Seq: NMTH01000026.1 Vibrio cholerae strain OYP4G08 Vc_OYP4G08_Contig_26, whole genome shotgun sequence (7005 bp)
Overview 1 RT 1: 2542-6175 bp Neighborhood of RT #1 [2542, 6231] YcaC_related RVT-UG7 YiaG RelE Feature: gene Location: 2542-2883 bp Feature: gene Location: 3266-3805 bp Feature: domain Description: YcaC_related Location: 3293-3755 bp Feature: domain Description: YcaC_related Location: 32 93-3755 bp Feature: gene Location: 3920-5458 bp Ori: PAS11310.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4292-4712 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 42 92 -4712 bp Feature: gene Location: 5598-5912 bp Ori: PAS11311.1 Feature: domain Description: YiaG Location: 5604-5895 bp Feature: domain Description: YiaG Location: 5604-5895 bp Feature: gene Location: 5899-6231 bp Ori: PAS11312.1 Feature: domain Description: RelE Location: 5902-6175 bp Feature: domain Description: RelE Location: 5902 -6175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaC_related (cd01012), RVT-UG7, YiaG (COG2944), RelE (pfam06296)