myRT

myRT report for GCA_002284565.1_ASM228456v1

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Seq: NPKI01000046.1 Mesorhizobium mediterraneum strain USDA 3392 C740, whole genome shotgun sequence (467582 bp)
Overview 1 RT 1: 94263-100164 bp Neighborhood of RT #1 [94263, 100172] RVT-UG7 carB Feature: gene Location: 94263-94727 bp Feature: gene Location: 94780-94997 bp Feature: gene Location: 94994-95869 bp Ori: PAP98173.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 95495-95867 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 95495-95867 bp Feature: gene Location: 95951-96625 bp Feature: gene Location: 96675-100172 bp Ori: PAP98175.1 Feature: domain Description: carB Location: 96678-100164 bp Feature: domain Description: carB Location: 96678-1 001 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, carB (PRK12815)

Seq: NPKI01000031.1 Mesorhizobium mediterraneum strain USDA 3392 C552, whole genome shotgun sequence (2922 bp)
Overview 1 RT 1: 563-2556 bp Neighborhood of RT #1 [563, 2784] GlxA RVT-GII RVT-GII Feature: gene Location: 563-1675 bp Ori: PAP99778.1 Feature: domain Description: GlxA Location: 635-1586 bp Feature: domain Description: GlxA Location: 635-1586 bp Feature: gene Location: 1986-2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2 130 bp Feature: gene Location: 2283-2784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-2556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 86-2 556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxA (COG4977), RVT-GII

Seq: NPKI01000001.1 Mesorhizobium mediterraneum strain USDA 3392 scaffold21, whole genome shotgun sequence (88741 bp)
Overview 1 RT 1: 85424-88343 bp Neighborhood of RT #1 [85424, 88369] ABC_6TM_YknV_like RVT-GII COG3448 Feature: gene Location: 85424-86230 bp Feature: domain Description: ABC_6TM_YknV_like Location: 85586-86228 bp Feature: domain Description: ABC_6TM_YknV_like Location: 85586-86228 bp Feature: gene Location: 86269-86559 bp Feature: gene Location: 86662-87360 bp Ori: PAQ04334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86827-86968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86827-86968 bp Feature: gene Location: 87284-88369 bp Ori: PAQ04349.1 Feature: domain Description: COG3448 Location: 87290-88343 bp Feature: domain Description: COG3 448 Location: 87290-883 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_6TM_YknV_like (cd18545), RVT-GII, COG3448 (CBS-domain-containing membrane protein )

Seq: NPKI01000052.1 Mesorhizobium mediterraneum strain USDA 3392 C658, whole genome shotgun sequence (52994 bp)
Overview 1 RT 1: 35425-39780 bp Neighborhood of RT #1 [35425, 39806] DDE_Tnp_Tn3 group_II_RT_mat RVT-GII Tnp_DNA_bind PHA02517 Feature: gene Location: 35425-35610 bp Feature: gene Location: 35770-36452 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 35773-36094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 35773-36094 bp Feature: gene Location: 36514-37935 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 36706-36883 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36706-36883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37219-37375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37219-37375 bp Feature: gene Location: 38376-38993 bp Feature: domain Description: Tnp_DNA_bind Location: 38409-38568 bp Feature: domain Description: Tnp_DNA_bind Location: 384 09-38568 bp Feature: gene Location: 39252-39806 bp Ori: PAP97598.1 Feature: domain Description: PHA02517 Location: 39513-39780 bp Feature: domain Description: PHA02517 Location: 39513-39780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), group_II_RT_mat (TIGR04416), RVT-GII, Tnp_DNA_bind (pfam14706), PHA02517 (putative transposase OrfB; Reviewed)