myRT

myRT report for GCA_002284655.1_ASM228465v1

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Seq: NJAA01000110.1 Escherichia coli strain 382.h contig_110, whole genome shotgun sequence (11111 bp)
Overview 1 RT 1: 4099-10031 bp Neighborhood of RT #1 [4099, 10216] AAA_23 Smc RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 4099-5925 bp Feature: domain Description: AAA_23 Location: 4153-4888 bp Feature: domain Description: AAA_23 Location: 41 53-4888 bp Feature: domain Description: Smc Location: 5137-5425 bp Feature: domain Description: Smc Location: 51 37-5425 bp Feature: gene Location: 6254-6556 bp Feature: gene Location: 6979-7914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7081-7681 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7081 -7681 bp Feature: gene Location: 7911-9563 bp Feature: domain Description: COG3950 Location: 8109-9525 bp Feature: domain Description: COG3950 Location: 81 09-9525 bp Feature: gene Location: 9566-10216 bp Feature: domain Description: TIGR02646 Location: 9632-10031 bp Feature: domain Description: TIGR02646 Location: 9632-1 0031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), Smc (COG1196), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NJAA01000015.1 Escherichia coli strain 382.h contig_15, whole genome shotgun sequence (1807 bp)
Overview 1 RT 1: 1-1470 bp Neighborhood of RT #1 [1, 1715] RVT-GII GIIM Feature: gene Location: 1-121 bp Feature: gene Location: 192-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1197 bp Feature: domain Description: GIIM Note: maturase Location: 1272-1470 bp Feature: domain Description: GIIM Note: maturase Location: 12 72 -1470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NJAA01000010.1 Escherichia coli strain 382.h contig_10, whole genome shotgun sequence (42406 bp)
Overview 1 RT 1: 17651-20198 bp Neighborhood of RT #1 [17651, 20625] YeeP RVT-GII InsE InsA Feature: gene Location: 17651-18526 bp Feature: domain Description: YeeP Location: 17666-18524 bp Feature: domain Description: YeeP Location: 17666-18524 bp Feature: gene Location: 18752-18994 bp Feature: gene Location: 18984-19266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18990-19080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18990-19080 bp Feature: gene Location: 19534-19872 bp Feature: domain Description: InsE Location: 19546-19819 bp Feature: domain Description: InsE Location: 19546-19819 bp Feature: gene Location: 19928-20625 bp Feature: domain Description: InsA Location: 19934-20198 bp Feature: domain Description: InsA Location: 1993 4-20198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), InsA (COG3677)

Seq: NJAA01000014.1 Escherichia coli strain 382.h contig_14, whole genome shotgun sequence (1121 bp)
Overview 1 RT 1: 5-1114 bp Neighborhood of RT #1 [5, 1121] RVT-GII Feature: gene Location: 5-367 bp Feature: gene Location: 282-590 bp Feature: gene Location: 661-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934 -1114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NJAA01000060.1 Escherichia coli strain 382.h contig_60, whole genome shotgun sequence (110157 bp)
Overview 1 RT 1: 28734-32475 bp Neighborhood of RT #1 [28734, 32477] Tox-WTIP RVT-GII GIIM YhhI YhhI PRK01271 Feature: gene Location: 28734-29000 bp Feature: domain Description: Tox-WTIP Location: 28857-28998 bp Feature: domain Description: Tox-WTIP Location: 2885 7-28998 bp Feature: gene Location: 29027-29371 bp Feature: gene Location: 29897-31219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30173-30830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30173-30830 bp Feature: domain Description: GIIM Note: maturase Location: 30914-31124 bp Feature: domain Description: GIIM Note: maturase Location: 30914-31124 bp Feature: gene Location: 31426-32199 bp Feature: domain Description: YhhI Location: 31429-31792 bp Feature: domain Description: YhhI Location: 31429-31792 bp Feature: domain Description: YhhI Location: 31849-32200 bp Feature: domain Description: YhhI Location: 31849-32200 bp Feature: gene Location: 32250-32477 bp Feature: domain Description: PRK01271 Location: 32253-32475 bp Feature: domain Description: PRK01271 Location: 3225 3-32475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tox-WTIP (pfam15654), RVT-GII, GIIM (pfam08388), YhhI (COG5433), PRK01271 (tautomerase PptA)