myRT

myRT report for GCA_002284735.1_ASM228473v1

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Seq: NJAC01000016.1 Escherichia coli strain 299.h contig_16, whole genome shotgun sequence (1149 bp)
Overview 1 RT 1: 5-1126 bp Neighborhood of RT #1 [5, 1149] RVT-GII Feature: gene Location: 5-367 bp Feature: gene Location: 282-590 bp Feature: gene Location: 661-1149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1 1 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NJAC01000062.1 Escherichia coli strain 299.h contig_62, whole genome shotgun sequence (111222 bp)
Overview 1 RT 1: 28734-32475 bp Neighborhood of RT #1 [28734, 32477] Tox-WTIP RVT-GII GIIM YhhI YhhI PRK01271 Feature: gene Location: 28734-29000 bp Feature: domain Description: Tox-WTIP Location: 28857-28998 bp Feature: domain Description: Tox-WTIP Location: 2 8857-2 8998 bp Feature: gene Location: 29027-29371 bp Feature: gene Location: 29897-31219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30173-30830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30173-30830 bp Feature: domain Description: GIIM Note: maturase Location: 30914-31124 bp Feature: domain Description: GIIM Note: maturase Location: 30914-3112 4 bp Feature: gene Location: 31426-32199 bp Feature: domain Description: YhhI Location: 31429-31792 bp Feature: domain Description: YhhI Location: 3142 9-31792 bp Feature: domain Description: YhhI Location: 31849-32200 bp Feature: domain Description: YhhI Location: 31849-32 2 00 bp Feature: gene Location: 32250-32477 bp Feature: domain Description: PRK01271 Location: 32253-32475 bp Feature: domain Description: PRK012 71 Location: 32 2 53-32 475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tox-WTIP (pfam15654), RVT-GII, GIIM (pfam08388), YhhI (COG5433), PRK01271 (tautomerase PptA)

Seq: NJAC01000008.1 Escherichia coli strain 299.h contig_8, whole genome shotgun sequence (11303 bp)
Overview 1 RT 1: 4291-10223 bp Neighborhood of RT #1 [4291, 10408] AAA_23 Smc RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 4291-6117 bp Feature: domain Description: AAA_23 Location: 4345-5080 bp Feature: domain Description: AAA_23 Location: 43 45-5080 bp Feature: domain Description: Smc Location: 5329-5617 bp Feature: domain Description: Smc Location: 53 29-5617 bp Feature: gene Location: 6446-6748 bp Feature: gene Location: 7171-8106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7273-7873 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7273 -7873 bp Feature: gene Location: 8103-9755 bp Feature: domain Description: COG3950 Location: 8301-9717 bp Feature: domain Description: COG3 950 Location: 83 01-9717 bp Feature: gene Location: 9758-10408 bp Feature: domain Description: TIGR02646 Location: 9824-10223 bp Feature: domain Description: TIGR02646 Location: 9824-10223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), Smc (COG1196), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NJAC01000017.1 Escherichia coli strain 299.h contig_17, whole genome shotgun sequence (1747 bp)
Overview 1 RT 1: 1-1410 bp Neighborhood of RT #1 [1, 1655] RVT-GII GIIM Feature: gene Location: 1-178 bp Feature: gene Location: 132-1655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 05-1137 bp Feature: domain Description: GIIM Note: maturase Location: 1212-1410 bp Feature: domain Description: GIIM Note: maturase Location: 1212-14 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NJAC01000013.1 Escherichia coli strain 299.h contig_13, whole genome shotgun sequence (42411 bp)
Overview 1 RT 1: 17656-20203 bp Neighborhood of RT #1 [17656, 20630] YeeP RVT-GII InsE InsA Feature: gene Location: 17656-18531 bp Feature: domain Description: YeeP Location: 17671-18529 bp Feature: domain Description: YeeP Location: 17671-185 29 bp Feature: gene Location: 18757-18999 bp Feature: gene Location: 18989-19271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18995-19085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18995 -19085 bp Feature: gene Location: 19539-19877 bp Feature: domain Description: InsE Location: 19551-19824 bp Feature: domain Description: InsE Location: 195 5 1-19824 bp Feature: gene Location: 19933-20630 bp Feature: domain Description: InsA Location: 19939-20203 bp Feature: domain Description: InsA Location: 19939-20203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-GII, InsE (COG2963), InsA (COG3677)