myRT

myRT report for GCA_002286395.1_ASM228639v1

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Seq: NRHU01000283.1 Klebsiella pneumoniae strain BA34595 NODE_283_length_1724_cov_35.2406_ID_565, whole genome shotgun sequence (1724 bp)
Overview 1 RT 1: 386-1394 bp Neighborhood of RT #1 [386, 1621] HTH_XRE RVT-Retrons Feature: gene Location: 386-693 bp Feature: domain Description: HTH_XRE Location: 398-563 bp Feature: domain Description: HTH_XRE Location: 398-563 bp Feature: gene Location: 671-1621 bp Ori: PAT70656.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851-1394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 851 -1 394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NRHU01000220.1 Klebsiella pneumoniae strain BA34595 NODE_220_length_3465_cov_60.7418_ID_439, whole genome shotgun sequence (3465 bp)
Overview 1 RT 1: 134-3466 bp Neighborhood of RT #1 [134, 3465] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 134-442 bp Feature: domain Description: Rep_3 Location: 140-404 bp Feature: domain Description: Rep_3 Location: 140-404 bp Feature: gene Location: 452-1149 bp Feature: domain Description: Zn_Tnp_IS1 Location: 458-560 bp Feature: domain Description: Zn_Tnp_IS1 Location: 458-560 bp Feature: domain Description: HTH_Tnp_IS1 Location: 581-713 bp Feature: domain Description: HTH_Tnp_IS1 Location: 581-713 bp Feature: gene Location: 1301-2785 bp Ori: PAT70812.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703-2 393 bp Feature: gene Location: 2785-3036 bp Feature: gene Location: 3193-3465 bp Ori: PAT70814.1 Feature: domain Description: PRK10276 Location: 3244-3466 bp Feature: domain Description: PRK102 76 Location: 32 44-3466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NRHU01000004.1 Klebsiella pneumoniae strain BA34595 NODE_4_length_116282_cov_16.492_ID_7, whole genome shotgun sequence (116282 bp)
Overview 1 RT 1: 103992-108873 bp Neighborhood of RT #1 [103992, 108875] PRK15110 PRK09951 RVT-UG11 umuC Feature: gene Location: 103992-104956 bp Feature: domain Description: PRK15110 Location: 103995-104457 bp Feature: domain Description: PRK15110 Location: 103 995-104457 bp Feature: gene Location: 105160-105828 bp Ori: PAT73721.1 Feature: domain Description: PRK09951 Location: 105163-105826 bp Feature: domain Description: PRK09951 Location: 105163 -105826 bp Feature: gene Location: 106029-106658 bp Ori: PAT73733.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 106032-106479 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 10603 2-106479 bp Feature: gene Location: 107197-107454 bp Feature: gene Location: 107610-108875 bp Ori: PAT73723.1 Feature: domain Description: umuC Location: 107613-108873 bp Feature: domain Description: umuC Location: 107613 -108873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609)

Seq: NRHU01000297.1 Klebsiella pneumoniae strain BA34595 NODE_297_length_1502_cov_146.187_ID_593, whole genome shotgun sequence (1502 bp)
Overview 1 RT 1: 1-1075 bp Neighborhood of RT #1 [1, 1138] RVT-GII GIIM Feature: gene Location: 1-1138 bp Ori: PAT70637.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-817 bp Feature: domain Description: GIIM Note: maturase Location: 856-1075 bp Feature: domain Description: GIIM Note: maturase Location: 856-1075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)