myRT

myRT report for GCA_002286775.1_ASM228677v1

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Seq: NSGJ01000018.1 Myroides sp. N17-2 contig18, whole genome shotgun sequence (91082 bp)
Overview 1 RT 1: 7764-12660 bp Neighborhood of RT #1 [7764, 12665] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG15 DUF3853 Feature: gene Location: 7764-9068 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7863-8109 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7863-81 09 bp Feature: domain Description: Phage_int_SAM_5 Location: 8163-8427 bp Feature: domain Description: Phage_int_SAM_5 Location: 81 63-8427 bp Feature: domain Description: INTN1_C_like Location: 8502-9033 bp Feature: domain Description: INTN1 _C_like Location: 8502-9033 bp Feature: gene Location: 9065-9946 bp Feature: gene Location: 9974-11497 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 10394-10805 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 0394-1 0805 bp Feature: gene Location: 11514-12023 bp Feature: gene Location: 12369-12665 bp Feature: domain Description: DUF3853 Location: 12378-12660 bp Feature: domain Description: DUF3853 Location: 1 2378-1 2660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG15, DUF3853 (pfam12964)

Seq: NSGJ01000025.1 Myroides sp. N17-2 contig25, whole genome shotgun sequence (74354 bp)
Overview 1 RT 1: 65071-69824 bp Neighborhood of RT #1 [65071, 69824] RVT-UG2 Feature: gene Location: 65071-66471 bp Feature: gene Location: 66577-66864 bp Feature: gene Location: 66957-68630 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 67254-68211 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 672 54-682 11 bp Feature: gene Location: 68794-69363 bp Feature: gene Location: 69621-69824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: NSGJ01000059.1 Myroides sp. N17-2 contig59, whole genome shotgun sequence (25025 bp)
Overview 1 RT 1: 8925-13226 bp Neighborhood of RT #1 [8925, 13687] Bac_Flav_CT_K Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J DUF4141 Feature: gene Location: 8925-9548 bp Feature: domain Description: Bac_Flav_CT_K Location: 8943-9546 bp Feature: domain Description: Bac_Flav_CT_K Location: 8943 -9546 bp Feature: gene Location: 9583-9780 bp Feature: domain Description: Bac_Flav_CT_J Location: 9595-9757 bp Feature: domain Description: Bac_Flav_CT_J Location: 9595-9757 bp Feature: gene Location: 9875-11704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10160-10982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10160-10982 bp Feature: domain Description: Intron_maturas2 Location: 11051-11438 bp Feature: domain Description: Intron_maturas2 Location: 11051-1143 8 bp Feature: domain Description: HNHc Note: nucleases Location: 11522-11678 bp Feature: domain Description: HNHc Note: nucleases Location: 11522-11678 bp Feature: gene Location: 12219-13052 bp Feature: domain Description: Bac_Flav_CT_J Location: 12231-13032 bp Feature: domain Description: Bac_Flav_CT_J Location: 1223 1-13 03 2 bp Feature: gene Location: 13055-13687 bp Feature: domain Description: DUF4141 Location: 13076-13226 bp Feature: domain Description: DUF4141 Location: 13 076-13 226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_K (TIGR03781), Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: NSGJ01000069.1 Myroides sp. N17-2 contig69, whole genome shotgun sequence (16861 bp)
Overview 1 RT 1: 354-4043 bp Neighborhood of RT #1 [354, 4048] DDE_Tnp_IS66 RVT_N RVT-GII RVT-GII GIIM HNHc DDE_Tnp_IS66 DDE_Tnp_IS66_C HTH_17 Feature: gene Location: 354-545 bp Feature: domain Description: DDE_Tnp_IS66 Location: 357-450 bp Feature: domain Description: DDE_Tnp_IS66 Location: 357-4 50 bp Feature: gene Location: 670-843 bp Feature: gene Location: 1057-1860 bp Feature: domain Description: RVT_N Location: 1117-1360 bp Feature: domain Description: RVT_N Location: 1117-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1405-1840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 05-184 0 bp Feature: gene Location: 1966-2781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2065 bp Feature: domain Description: GIIM Note: maturase Location: 2131-2365 bp Feature: domain Description: GIIM Note: maturase Location: 2131-2365 bp Feature: domain Description: HNHc Note: nucleases Location: 2587-2731 bp Feature: domain Description: HNHc Note: nucleases Location: 2587-2731 bp Feature: gene Location: 3116-3490 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3134-3320 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3134 -3320 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3347-3452 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 334 7-34 52 bp Feature: gene Location: 3782-4048 bp Feature: domain Description: HTH_17 Location: 3914-4043 bp Feature: domain Description: HTH_17 Location: 3914 -4 04 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66_C (pfam13817), HTH_17 (pfam12728)

Seq: NSGJ01000092.1 Myroides sp. N17-2 contig92, whole genome shotgun sequence (2365 bp)
Overview 1 RT 1: 115-1986 bp Neighborhood of RT #1 [115, 1986] RVT_N RVT-GII GIIM Feature: gene Location: 115-1764 bp Feature: domain Description: RVT_N Location: 169-412 bp Feature: domain Description: RVT_N Location: 169-412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 7-1105 bp Feature: domain Description: GIIM Note: maturase Location: 1156-1390 bp Feature: domain Description: GIIM Note: maturase Location: 115 6-1390 bp Feature: gene Location: 1819-1986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NSGJ01000093.1 Myroides sp. N17-2 contig93, whole genome shotgun sequence (2111 bp)
Overview 1 RT 1: 3-1353 bp Neighborhood of RT #1 [3, 1502] RVT_N RVT-GII YkfC Feature: gene Location: 3-1502 bp Feature: domain Description: RVT_N Location: 63-306 bp Feature: domain Description: RVT_N Location: 6 3-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1014 bp Feature: domain Description: YkfC Location: 1110-1353 bp Feature: domain Description: YkfC Location: 1110-1353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)