myRT

myRT report for GCA_002286785.1_ASM228678v1

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Seq: MUJY01000173.1 Pseudomonas sp. PIC25 Contig_000173, whole genome shotgun sequence (25021 bp)
Overview 1 RT 1: 8310-14973 bp Neighborhood of RT #1 [8310, 14973] AdoMet_MTases DEXHc_Snf DEXDc_RapA RVT_N RVT-GII GIIM HNH SF2_C_SNF Feature: gene Location: 8310-9767 bp Feature: domain Description: AdoMet_MTases Location: 8433-8826 bp Feature: domain Description: AdoMet_MTases Location: 8433-8826 bp Feature: gene Location: 9869-10948 bp Feature: domain Description: DEXHc_Snf Location: 10055-10307 bp Feature: domain Description: DEXHc_Snf Location: 1 0055-1 0307 bp Feature: domain Description: DEXDc_RapA Location: 10862-10937 bp Feature: domain Description: DEXDc_RapA Location: 1 0862-1 0937 bp Feature: gene Location: 11539-13239 bp Feature: RT Description: RVT_N Location: 11593-11836 bp Feature: RT Description: RVT_N Location: 1 1 593-1 1 836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11881-12523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 881 -1 2523 bp Feature: domain Description: GIIM Note: maturase Location: 12580-12808 bp Feature: domain Description: GIIM Note: maturase Location: 1 2580-1 2808 bp Feature: domain Description: HNH Note: nucleases Location: 13066-13204 bp Feature: domain Description: HNH Note: nucleases Location: 1 3066-1 3204 bp Feature: gene Location: 13322-14509 bp Feature: domain Description: SF2_C_SNF Location: 13943-14345 bp Feature: domain Description: SF2_C_SNF Location: 1 3943-1 4345 bp Feature: gene Location: 14611-14973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), SF2_C_SNF (cd18793), AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), DEXDc_RapA (cd18011)

Seq: MUJY01000007.1 Pseudomonas sp. PIC25 Contig_000007, whole genome shotgun sequence (4617 bp)
Overview 1 RT 1: 16-4241 bp Neighborhood of RT #1 [16, 4270] DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 16-264 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 127-238 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12 7-2 38 bp Feature: gene Location: 350-2011 bp Feature: RT Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1319 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1604 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1604 bp Feature: gene Location: 2588-3871 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2690-2903 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 690-2 903 bp Feature: domain Description: zf-IS66 Location: 2930-3056 bp Feature: domain Description: zf-IS66 Location: 2 930-3056 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3098-3872 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3098-3872 bp Feature: gene Location: 3935-4270 bp Feature: domain Description: TnpB_IS66 Location: 3953-4241 bp Feature: domain Description: TnpB_IS66 Location: 3953-42 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: MUJY01000187.1 Pseudomonas sp. PIC25 Contig_000187, whole genome shotgun sequence (77610 bp)
Overview 1 RT 1: 65745-71843 bp Neighborhood of RT #1 [65745, 71843] DDE_Tnp_1_2 DDE_Tnp_1 RVT_N RVT-GII GIIM IS5 Feature: gene Location: 65745-66182 bp Feature: domain Description: DDE_Tnp_1_2 Location: 65892-66153 bp Feature: domain Description: DDE_Tnp_1_2 Location: 65892-66153 bp Feature: gene Location: 67795-68250 bp Feature: domain Description: DDE_Tnp_1 Location: 67798-68200 bp Feature: domain Description: DDE_Tnp_1 Location: 67798-68200 bp Feature: gene Location: 68326-69831 bp Feature: RT Description: RVT_N Location: 68410-68635 bp Feature: RT Description: RVT_N Location: 68410-6863 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68683-69325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68683 -693 25 bp Feature: domain Description: GIIM Note: maturase Location: 69376-69610 bp Feature: domain Description: GIIM Note: maturase Location: 693 76-69610 bp Feature: gene Location: 70424-70957 bp Feature: domain Description: IS5 Location: 70613-70946 bp Feature: domain Description: IS5 Location: 70613 -70946 bp Feature: gene Location: 71613-71843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IS5 (COG3039)