myRT

myRT report for GCA_002286845.1_ASM228684v1

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Seq: NRIU01001052.1 Geitlerinema sp. FC II Abyss71_237_len:20561, whole genome shotgun sequence (20561 bp)
Overview 1 RT 1: 8690-16460 bp Neighborhood of RT #1 [8690, 16777] TypA_BipA InsQ RVT_N RVT-GII YkfC HNH Uma2 DUF820 Feature: gene Location: 8690-10480 bp Ori: PPT08950.1 Feature: domain Description: TypA_BipA Location: 8705-10475 bp Feature: domain Description: TypA_BipA Location: 8705-1 0475 bp Feature: gene Location: 11674-12876 bp Ori: PPT08940.1 Feature: domain Description: InsQ Location: 11677-12775 bp Feature: domain Description: InsQ Location: 1 1 677-1 2775 bp Feature: gene Location: 12894-14696 bp Ori: PPT08939.1 Feature: domain Description: RVT_N Location: 12936-13182 bp Feature: domain Description: RVT_N Location: 1 2936-1 31 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13224-13893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3224-1 3893 bp Feature: domain Description: YkfC Location: 13953-14286 bp Feature: domain Description: YkfC Location: 1 3953-1 4286 bp Feature: domain Description: HNH Note: nucleases Location: 14448-14583 bp Feature: domain Description: HNH Note: nucleases Location: 1 4448-1 4583 bp Feature: gene Location: 15393-15869 bp Ori: PPT08945.1 Feature: domain Description: Uma2 Location: 15441-15861 bp Feature: domain Description: Uma2 Location: 1 5441 -1 5861 bp Feature: gene Location: 16145-16777 bp Ori: PPT08934.1 Feature: domain Description: DUF820 Location: 16220-16460 bp Feature: domain Description: DUF820 Location: 1 6220-1 6460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TypA_BipA (TIGR01394), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), Uma2 (pfam05685), DUF820

Seq: NRIU01002715.1 Geitlerinema sp. FC II Abyss71_289_len:4465, whole genome shotgun sequence (4465 bp)
Overview 1 RT 1: 521-4181 bp Neighborhood of RT #1 [521, 4216] pcrA DEDDh pcrA RVT-UG14 Feature: gene Location: 521-640 bp Feature: gene Location: 673-3144 bp Ori: PPT05047.1 Feature: domain Description: pcrA Location: 685-1990 bp Feature: domain Description: pcrA Location: 685-1990 bp Feature: domain Description: DEDDh Location: 2068-2527 bp Feature: domain Description: DEDDh Location: 2 068-2 52 7 bp Feature: domain Description: pcrA Location: 2596-3133 bp Feature: domain Description: pcrA Location: 2 596-3133 bp Feature: gene Location: 3230-4216 bp Ori: PPT05048.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 3734-4181 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 3734-4181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), DEDDh (cd06127), RVT-UG14

Seq: NRIU01002356.1 Geitlerinema sp. FC II Abyss71_548_len:37110, whole genome shotgun sequence (37110 bp)
Overview 1 RT 1: 32878-36435 bp Neighborhood of RT #1 [32878, 36542] Uma2 InsQ RVT_N RVT-GII GIIM McrA Feature: gene Location: 32878-33447 bp Ori: PPT05984.1 Feature: domain Description: Uma2 Location: 32917-33418 bp Feature: domain Description: Uma2 Location: 3 2917-3 3 418 bp Feature: gene Location: 33510-34613 bp Ori: PPT05996.1 Feature: domain Description: InsQ Location: 33579-34569 bp Feature: domain Description: InsQ Location: 3 3 579-3 4569 bp Feature: gene Location: 34689-36542 bp Ori: PPT05978.1 Feature: domain Description: RVT_N Location: 34782-35028 bp Feature: domain Description: RVT_N Location: 3 4782-3 5028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35070-35739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5070-3 573 9 bp Feature: domain Description: GIIM Note: maturase Location: 35838-36072 bp Feature: domain Description: GIIM Note: maturase Location: 3 583 8-3 6072 bp Feature: domain Description: McrA Location: 36150-36435 bp Feature: domain Description: McrA Location: 3 6150-3 643 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: NRIU01001509.1 Geitlerinema sp. FC II Masurca_183_len:60988, whole genome shotgun sequence (60988 bp)
Overview 1 RT 1: 40425-43580 bp Neighborhood of RT #1 [40425, 43580] RVT-AbiA Uma2 Feature: gene Location: 40425-40601 bp Feature: gene Location: 40728-40850 bp Feature: gene Location: 40860-42806 bp Ori: PPT08157.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 41361-41841 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 4 1361-4 184 1 bp Feature: gene Location: 42890-43444 bp Ori: PPT08098.1 Feature: domain Description: Uma2 Location: 42893-43409 bp Feature: domain Description: Uma2 Location: 4 2893-4 34 09 bp Feature: gene Location: 43446-43580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, Uma2 (pfam05685)