myRT

myRT report for GCA_002286975.1_ASM228697v1

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Seq: NSKB01000007.1 Halomonas sp. WRN001 contig7, whole genome shotgun sequence (372698 bp)
Overview 1 RT 1: 370072-372374 bp Neighborhood of RT #1 [370072, 372397] RVT-Retrons Tra5 Feature: gene Location: 370072-370263 bp Feature: gene Location: 370269-370517 bp Feature: gene Location: 370523-371464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370625-371216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370625-371 21 6 bp Feature: gene Location: 371600-372397 bp Feature: domain Description: Tra5 Location: 371744-372374 bp Feature: domain Description: Tra5 Location: 371 744-372374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Tra5 (COG2801)

Seq: NSKB01000001.1 Halomonas sp. WRN001 contig1, whole genome shotgun sequence (825534 bp)
Overview 1 RT 1: 33384-37670 bp 2 RT 2: 472594-478114 bp Neighborhood of RT #1 [33384, 37702] Methyltransf_11 Acetyltransf_1 RVT-GII GIIM RibD_C RimL Neighborhood of RT #2 [472594, 478149] PHA00653 Avd_like RVT-DGRs prfC TatD_DNAse Feature: gene Location: 33384-33992 bp Feature: domain Description: Methyltransf_11 Location: 33489-33768 bp Feature: domain Description: Methyltransf_11 Location: 33489-33768 bp Feature: gene Location: 34090-34494 bp Feature: domain Description: Acetyltransf_1 Location: 34162-34456 bp Feature: domain Description: Acetyltransf_1 Location: 34162 -34456 bp Feature: gene Location: 34978-36309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35272-35890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 72 -35890 bp Feature: domain Description: GIIM Note: maturase Location: 35938-36160 bp Feature: domain Description: GIIM Note: maturase Location: 35938-36160 bp Feature: gene Location: 36470-37030 bp Feature: domain Description: RibD_C Location: 36485-37001 bp Feature: domain Description: RibD_C Location: 36485-37001 bp Feature: gene Location: 37115-37702 bp Feature: domain Description: RimL Location: 37136-37670 bp Feature: domain Description: RimL Location: 37136-37670 bp Feature: gene Location: 472594-473649 bp Feature: domain Description: PHA00653 Location: 472798-473647 bp Feature: domain Description: PHA00653 Location: 472 798-473647 bp Feature: gene Location: 473646-474005 bp Feature: domain Description: Avd_like Location: 473697-473997 bp Feature: domain Description: Avd_like Location: 473697-473997 bp Feature: gene Location: 474245-475363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 474548-475160 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 474548-475160 bp Feature: gene Location: 475554-477143 bp Feature: domain Description: prfC Location: 475575-477141 bp Feature: domain Description: prfC Location: 475575-477141 bp Feature: gene Location: 477364-478149 bp Feature: domain Description: TatD_DNAse Location: 477370-478114 bp Feature: domain Description: TatD_DNAse Location: 477370-478114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), RibD_C (pfam01872), RimL (COG1670), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, prfC (TIGR00503)
TatD_DNAse (cd01310)

Seq: NSKB01000006.1 Halomonas sp. WRN001 contig6, whole genome shotgun sequence (488400 bp)
Overview 1 RT 1: 67895-74376 bp 2 RT 2: 222427-229109 bp Neighborhood of RT #1 [67895, 74393] Tra5 PIN_NicB-like RVT-GII GIIM Acetyltransf_1 YbiR_permease Neighborhood of RT #2 [222427, 229156] LysR RhaT RVT-GII AbrB Gneg_AbrB_dup MmgE_PrpD Feature: gene Location: 67895-68320 bp Feature: domain Description: Tra5 Location: 67910-68246 bp Feature: domain Description: Tra5 Location: 67910-68246 bp Feature: gene Location: 68957-69772 bp Feature: domain Description: PIN_NicB-like Location: 68999-69548 bp Feature: domain Description: PIN_NicB-like Location: 68999-69548 bp Feature: gene Location: 70270-71583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70546-71200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70546-71200 bp Feature: domain Description: GIIM Note: maturase Location: 71284-71494 bp Feature: domain Description: GIIM Note: maturase Location: 71284-71494 bp Feature: gene Location: 72664-73146 bp Feature: domain Description: Acetyltransf_1 Location: 72760-73099 bp Feature: domain Description: Acetyltransf_1 Location: 72760-73 099 bp Feature: gene Location: 73293-74393 bp Feature: domain Description: YbiR_permease Location: 73332-74376 bp Feature: domain Description: YbiR_permease Location: 73 3 3 2-743 76 bp Feature: gene Location: 222427-223335 bp Feature: domain Description: LysR Location: 222454-223312 bp Feature: domain Description: LysR Location: 222454-223 3 12 bp Feature: gene Location: 223424-224347 bp Feature: domain Description: RhaT Location: 223436-224300 bp Feature: domain Description: RhaT Location: 223 43 6-2243 00 bp Feature: gene Location: 225113-226417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225395-226064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2253 95-226064 bp Feature: gene Location: 226646-227713 bp Feature: domain Description: AbrB Location: 226667-226793 bp Feature: domain Description: AbrB Location: 226667-226793 bp Feature: domain Description: Gneg_AbrB_dup Location: 227195-227633 bp Feature: domain Description: Gneg_AbrB_dup Location: 227195-22763 3 bp Feature: gene Location: 227756-229156 bp Feature: domain Description: MmgE_PrpD Location: 227792-229109 bp Feature: domain Description: MmgE_PrpD Location: 227792-229109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), PIN_NicB-like (cd18722), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583), YbiR_permease (cd01117), LysR (COG0583), RhaT (TIGR00776), AbrB (pfam05145), Gneg_AbrB_dup (TIGR03082)
MmgE_PrpD (pfam03972)