myRT

myRT report for GCA_002287235.1_ASM228723v1

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Seq: LMVP01000321.1 Methanosarcina spelaei strain MC-15 contig_388, whole genome shotgun sequence (986 bp)
Overview 1 RT 1: 129-657 bp Neighborhood of RT #1 [129, 824] RVT-GII GIIM Feature: gene Location: 129-824 bp Ori: PAV12216.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135-372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35-372 bp Feature: domain Description: GIIM Note: maturase Location: 423-657 bp Feature: domain Description: GIIM Note: maturase Location: 423-657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LMVP01000180.1 Methanosarcina spelaei strain MC-15 contig_260, whole genome shotgun sequence (3404 bp)
Overview 1 RT 1: 89-3404 bp Neighborhood of RT #1 [89, 3404] RVT_N RVT-GII GIIM DnaC Feature: gene Location: 89-1573 bp Ori: PAV12763.1 Feature: domain Description: RVT_N Location: 179-413 bp Feature: domain Description: RVT_N Location: 179-413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1103 bp Feature: domain Description: GIIM Note: maturase Location: 1154-1388 bp Feature: domain Description: GIIM Note: maturase Location: 1154-1388 bp Feature: gene Location: 2159-2932 bp Ori: PAV12764.1 Feature: domain Description: DnaC Location: 2162-2906 bp Feature: domain Description: DnaC Location: 2 162 -2 906 bp Feature: gene Location: 2929-3404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484)

Seq: LMVP01000342.1 Methanosarcina spelaei strain MC-15 contig_406, whole genome shotgun sequence (786 bp)
Overview 1 RT 1: 1-637 bp Neighborhood of RT #1 [1, 646] RVT_N RVT-GII Feature: gene Location: 1-646 bp Feature: domain Description: RVT_N Location: 73-316 bp Feature: domain Description: RVT_N Location: 73 -3 16 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 61-63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LMVP01000054.1 Methanosarcina spelaei strain MC-15 contig_147, whole genome shotgun sequence (12510 bp)
Overview 1 RT 1: 9724-11920 bp Neighborhood of RT #1 [9724, 12210] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 9724-10908 bp Ori: PAV13801.1 Feature: domain Description: DUF1887 Location: 9856-10231 bp Feature: domain Description: DUF1887 Location: 9856-10231 bp Feature: domain Description: DUF1887 Location: 10480-10783 bp Feature: domain Description: DUF1887 Location: 104 80-10783 bp Feature: gene Location: 10948-11622 bp Ori: PAV13802.1 Feature: domain Description: Cas6b_N Location: 10969-11269 bp Feature: domain Description: Cas6b_N Location: 10969-11269 bp Feature: domain Description: Cas6b_C Location: 11281-11614 bp Feature: domain Description: Cas6b_C Location: 11281-11614 bp Feature: gene Location: 11743-12210 bp Ori: PAV13803.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11746-11920 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1174 6-11920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR