myRT

myRT report for GCA_002287375.1_ASM228737v1

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Seq: NPOA01000041.1 Virgibacillus profundi strain P3-H5 NODE_43_length_622_cov_0.423695, whole genome shotgun sequence (622 bp)
Overview 1 RT 1: 1-589 bp Neighborhood of RT #1 [1, 622] RVT-GII Feature: gene Location: 1-382 bp Feature: gene Location: 385-622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NPOA01000003.1 Virgibacillus profundi strain P3-H5 NODE_3_length_288267_cov_117.568, whole genome shotgun sequence (288267 bp)
Overview 1 RT 1: 236103-240434 bp Neighborhood of RT #1 [236103, 240550] InsQ RhtB RVT-GII GIIM CcmA ABC2_membrane Feature: gene Location: 236103-236783 bp Feature: domain Description: InsQ Location: 236181-236661 bp Feature: domain Description: InsQ Location: 2 36181-2 36661 bp Feature: gene Location: 236990-237622 bp Feature: domain Description: RhtB Location: 236993-237599 bp Feature: domain Description: RhtB Location: 2 36993-2 37599 bp Feature: gene Location: 237945-238514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237951-238089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 37951-2 38089 bp Feature: domain Description: GIIM Note: maturase Location: 238131-238350 bp Feature: domain Description: GIIM Note: maturase Location: 2 38131-2 38350 bp Feature: gene Location: 238875-239819 bp Feature: domain Description: CcmA Location: 238887-239790 bp Feature: domain Description: CcmA Location: 2 38887-2 39790 bp Feature: gene Location: 239819-240550 bp Feature: domain Description: ABC2_membrane Location: 239840-240434 bp Feature: domain Description: ABC2 _membrane Location: 2 39840-2 40434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RhtB (COG1280), RVT-GII, GIIM (pfam08388), CcmA (COG4133), ABC2_membrane (pfam01061)

Seq: NPOA01000026.1 Virgibacillus profundi strain P3-H5 NODE_26_length_16291_cov_110.3, whole genome shotgun sequence (16291 bp)
Overview 1 RT 1: 8976-14586 bp Neighborhood of RT #1 [8976, 14586] PRK13927 PRK00024 RVT-GII Intron_maturas2 HNHc RadC Feature: gene Location: 8976-10016 bp Feature: domain Description: PRK13927 Location: 8994-9981 bp Feature: domain Description: PRK13 927 Location: 8994-9981 bp Feature: gene Location: 10261-10401 bp Feature: domain Description: PRK00024 Location: 10264-10396 bp Feature: domain Description: PRK00024 Location: 10264-103 96 bp Feature: gene Location: 10482-12365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10746-11586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10746-11586 bp Feature: domain Description: Intron_maturas2 Location: 11745-11952 bp Feature: domain Description: Intron_maturas2 Location: 11745-11952 bp Feature: domain Description: HNHc Note: nucleases Location: 12144-12321 bp Feature: domain Description: HNHc Note: nucleases Location: 12144-123 21 bp Feature: gene Location: 12916-13485 bp Feature: domain Description: RadC Location: 12940-13465 bp Feature: domain Description: RadC Location: 12940-13 465 bp Feature: gene Location: 13678-14586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RadC (pfam04002), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: NPOA01000008.1 Virgibacillus profundi strain P3-H5 NODE_8_length_205772_cov_112.401, whole genome shotgun sequence (205772 bp)
Overview 1 RT 1: 27357-32765 bp Neighborhood of RT #1 [27357, 32770] LysE BioY RVT-GII PRK12276 Feature: gene Location: 27357-27557 bp Feature: domain Description: LysE Location: 27390-27540 bp Feature: domain Description: LysE Location: 27390-2754 0 bp Feature: gene Location: 28343-28882 bp Feature: domain Description: BioY Location: 28349-28844 bp Feature: domain Description: BioY Location: 2834 9-2884 4 bp Feature: gene Location: 29216-31012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29507-30206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29507-30206 bp Feature: gene Location: 31361-31630 bp Feature: gene Location: 32027-32770 bp Feature: domain Description: PRK12276 Location: 32033-32765 bp Feature: domain Description: PRK12276 Location: 32033-32765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysE (pfam01810), BioY (pfam02632), RVT-GII, PRK12276 (putative heme peroxidase; Provisional)