myRT

myRT report for GCA_002289425.1_ASM228942v1

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Seq: NSBV01000019.1 Escherichia coli strain AK1 NODE_19_length_69813_cov_315.792, whole genome shotgun sequence (69813 bp)
Overview 1 RT 1: 50421-54339 bp Neighborhood of RT #1 [50421, 54339] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 50421-50654 bp Ori: PAX41860.1 Feature: domain Description: DUF905 Location: 50451-50649 bp Feature: domain Description: DUF905 Location: 50451 -50649 bp Feature: gene Location: 50717-51214 bp Ori: PAX41861.1 Feature: domain Description: PRK13732 Location: 50720-51212 bp Feature: domain Description: PRK1 3732 Location: 50720-51 21 2 bp Feature: gene Location: 51364-53265 bp Ori: PAX41862.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51631-52462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 631 -52462 bp Feature: domain Description: Intron_maturas2 Location: 52576-52834 bp Feature: domain Description: Intron_maturas2 Location: 52576-52834 bp Feature: domain Description: HNHc Note: nucleases Location: 53008-53170 bp Feature: domain Description: HNHc Note: nucleases Location: 53008-531 70 bp Feature: gene Location: 53943-54149 bp Feature: gene Location: 54151-54339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NSBV01000016.1 Escherichia coli strain AK1 NODE_16_length_89517_cov_271.472, whole genome shotgun sequence (89517 bp)
Overview 1 RT 1: 816-4563 bp Neighborhood of RT #1 [816, 5443] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 Feature: gene Location: 816-1555 bp Feature: domain Description: InsE Location: 819-1158 bp Feature: domain Description: InsE Location: 819-1158 bp Feature: gene Location: 1548-1919 bp Feature: gene Location: 2213-3736 bp Ori: PAX42041.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2486-3218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 486-32 18 bp Feature: domain Description: GIIM Note: maturase Location: 3293-3491 bp Feature: domain Description: GIIM Note: maturase Location: 32 93-3491 bp Feature: gene Location: 3826-4299 bp Feature: domain Description: PHA02517 Location: 3832-4297 bp Feature: domain Description: PHA02 517 Location: 3832 -42 97 bp Feature: gene Location: 4302-5443 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4311-4563 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4311-4563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Arm-DNA-bind_3 (pfam13356)

Seq: NSBV01000007.1 Escherichia coli strain AK1 NODE_7_length_212915_cov_258.505, whole genome shotgun sequence (212915 bp)
Overview 1 RT 1: 137510-143890 bp 2 RT 2: 149576-157227 bp Neighborhood of RT #1 [137510, 143890] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Neighborhood of RT #2 [149576, 157262] Psu Ogr_Delta RVT-UG8 RVT-UG3 PRK09692 proA Feature: gene Location: 137510-138430 bp Ori: PAX43294.1 Feature: domain Description: AbiEii Location: 137552-138293 bp Feature: domain Description: AbiEii Location: 13 7552-13 8293 bp Feature: gene Location: 138417-139220 bp Ori: PAX43295.1 Feature: domain Description: AbiEi_3_N Location: 138450-138711 bp Feature: domain Description: AbiEi_3 _N Location: 13 8450-13 8711 bp Feature: domain Description: AbiEi_3 Location: 138723-139179 bp Feature: domain Description: AbiEi_3 Location: 13 8723 -13 9179 bp Feature: gene Location: 139515-142724 bp Ori: PAX43296.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140043-140532 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140043 -14053 2 bp Feature: domain Description: nitrilase Location: 142038-142635 bp Feature: domain Description: nitrilase Location: 14203 8-14263 5 bp Feature: gene Location: 143071-143541 bp Feature: gene Location: 143732-143890 bp Feature: gene Location: 149576-150148 bp Ori: PAX43305.1 Feature: domain Description: Psu Location: 149597-150110 bp Feature: domain Description: Psu Location: 149597-150110 bp Feature: gene Location: 150129-150404 bp Ori: PAX43306.1 Feature: domain Description: Ogr_Delta Location: 150144-150279 bp Feature: domain Description: Ogr_Delta Location: 150144-150279 bp Feature: gene Location: 151050-153011 bp Ori: PAX43307.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 151569-152016 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 151569-152016 bp Feature: gene Location: 153008-154291 bp Ori: PAX43308.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 153296-153803 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 153 296-153 803 bp Feature: gene Location: 154470-155654 bp Ori: PAX43309.1 Feature: domain Description: PRK09692 Location: 154476-155628 bp Feature: domain Description: PRK09692 Location: 154476-155628 bp Feature: gene Location: 156009-157262 bp Ori: PAX43310.1 Gene: proA Feature: domain Description: proA Location: 156036-157227 bp Feature: domain Description: proA Location: 15603 6-157227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Psu (pfam07455), Ogr_Delta (pfam04606), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)
proA (TIGR00407)