myRT

myRT report for GCA_002289475.1_ASM228947v1

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Seq: NTDL01000033.1 Escherichia coli strain KCJK511 NODE_9_length_220792_cov_14.0843_ID_17, whole genome shotgun sequence (220792 bp)
Overview 1 RT 1: 77501-81380 bp Neighborhood of RT #1 [77501, 81385] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 77501-78217 bp Feature: domain Description: rph Location: 77504-78212 bp Feature: domain Description: rph Location: 77504-7821 2 bp Feature: gene Location: 78283-78924 bp Feature: domain Description: pyrE Location: 78286-78919 bp Feature: domain Description: pyrE Location: 78286-7891 9 bp Feature: gene Location: 79222-80181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79357-79906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79357-79906 bp Feature: gene Location: 80227-80823 bp Feature: domain Description: slmA Location: 80233-80809 bp Feature: domain Description: slmA Location: 80233-80809 bp Feature: gene Location: 80930-81385 bp Feature: domain Description: dut Location: 80933-81380 bp Feature: domain Description: dut Location: 80933-81 380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NTDL01000017.1 Escherichia coli strain KCJK511 NODE_23_length_16994_cov_12.0845_ID_45, whole genome shotgun sequence (16994 bp)
Overview 1 RT 1: 3888-7362 bp Neighborhood of RT #1 [3888, 7379] Rep_3 Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 3888-4196 bp Feature: domain Description: Rep_3 Location: 3894-4158 bp Feature: domain Description: Rep_3 Location: 3894-4158 bp Feature: gene Location: 4206-4903 bp Feature: domain Description: Zn_Tnp_IS1 Location: 4212-4314 bp Feature: domain Description: Zn_Tnp_IS1 Location: 42 12 -4314 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4335-4467 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4335-4467 bp Feature: gene Location: 5055-6539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5457-6147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5457-6147 bp Feature: gene Location: 6539-6790 bp Feature: gene Location: 6948-7379 bp Feature: domain Description: PRK10276 Location: 6999-7362 bp Feature: domain Description: PRK102 76 Location: 6999-7362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)