myRT

myRT report for GCA_002290835.1_ASM229083v1

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Seq: NSEF01000194.1 Escherichia coli strain JEONG-5120 NODE_232_length_6699_cov_5.64486_ID_463, whole genome shotgun sequence (6699 bp)
Overview 1 RT 1: 2301-6631 bp Neighborhood of RT #1 [2301, 6699] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ27095.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-2826 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ27096.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621 -5825 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6699 bp Ori: PAZ27098.1 Feature: domain Description: InsQ Location: 6403-6631 bp Feature: domain Description: InsQ Location: 6403-6631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEF01000613.1 Escherichia coli strain JEONG-5120 NODE_357_length_2972_cov_7.50404_ID_713, whole genome shotgun sequence (2972 bp)
Overview 1 RT 1: 1615-2968 bp Neighborhood of RT #1 [1615, 2972] DEDD_Tnp_IS110 ParE_toxin RVT-UG4 Feature: gene Location: 1615-1923 bp Ori: PAZ22796.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1648-1813 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1648-1813 bp Feature: gene Location: 1923-2033 bp Feature: domain Description: ParE_toxin Location: 1932-2031 bp Feature: domain Description: ParE_toxin Location: 1932 -2 031 bp Feature: gene Location: 2203-2972 bp Ori: PAZ22797.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2605-2968 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 605-2 968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), ParE_toxin (pfam05016), RVT-UG4

Seq: NSEF01000625.1 Escherichia coli strain JEONG-5120 NODE_362_length_2776_cov_6.23594_ID_723, whole genome shotgun sequence (2776 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: gene Location: 1737-2150 bp Ori: PAZ22693.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 1791-213 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEF01000109.1 Escherichia coli strain JEONG-5120 NODE_518_length_935_cov_8.62129_ID_1035, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-935 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-676 bp Ori: PAZ27521.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 4 9-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: gene Location: 822-935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEF01000297.1 Escherichia coli strain JEONG-5120 NODE_316_length_3914_cov_8.31318_ID_631, whole genome shotgun sequence (3914 bp)
Overview 1 RT 1: 1-3914 bp Neighborhood of RT #1 [1, 3914] HTH_28 rve PRK09738 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-832 bp Ori: PAZ26139.1 Feature: domain Description: HTH_28 Location: 121-241 bp Feature: domain Description: HTH_28 Location: 121-241 bp Feature: domain Description: rve Location: 532-829 bp Feature: domain Description: rve Location: 5 32-829 bp Feature: gene Location: 904-1083 bp Ori: PAZ26136.1 Feature: domain Description: PRK09738 Location: 907-1060 bp Feature: domain Description: PRK09738 Location: 907-1060 bp Feature: gene Location: 1648-3327 bp Ori: PAZ26140.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1699-1942 bp Feature: domain Description: RVT_N Location: 1699-1942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987-2629 bp Feature: domain Description: GIIM Note: maturase Location: 2683-2914 bp Feature: domain Description: GIIM Note: maturase Location: 2683-2914 bp Feature: domain Description: HNHc Note: nucleases Location: 3127-3289 bp Feature: domain Description: HNHc Note: nucleases Location: 3127-3289 bp Feature: gene Location: 3492-3677 bp Feature: gene Location: 3818-3914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), rve (pfam00665), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NSEF01000216.1 Escherichia coli strain JEONG-5120 NODE_506_length_993_cov_22.2783_ID_1011, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ26963.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEF01000376.1 Escherichia coli strain JEONG-5120 NODE_56_length_23160_cov_4.58833_ID_111, whole genome shotgun sequence (23160 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ24715.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337 -67 3 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK1047 2 Location: 127 5-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ24700.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK107 39 Location: 2495-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)