myRT

myRT report for GCA_002290875.1_ASM229087v1

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Seq: NSEH01000142.1 Escherichia coli strain JEONG-5250 NODE_389_length_935_cov_16.1312_ID_777, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-932 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-114 bp Feature: gene Location: 260-935 bp Ori: PAZ41480.1 Feature: domain Description: RVT_N Location: 308-545 bp Feature: domain Description: RVT_N Location: 308-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEH01000397.1 Escherichia coli strain JEONG-5250 NODE_247_length_3777_cov_11.5153_ID_493, whole genome shotgun sequence (3777 bp)
Overview 1 RT 1: 1923-3777 bp Neighborhood of RT #1 [1923, 3777] ParE_toxin RVT-UG4 Feature: gene Location: 1923-2033 bp Feature: domain Description: ParE_toxin Location: 1932-2031 bp Feature: domain Description: ParE_toxin Location: 1932 -2 031 bp Feature: gene Location: 2038-2217 bp Feature: gene Location: 2383-3312 bp Ori: PAZ33373.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2605-3046 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 605-3046 bp Feature: gene Location: 3275-3777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-UG4

Seq: NSEH01000363.1 Escherichia coli strain JEONG-5250 NODE_18_length_48812_cov_7.56935_ID_35, whole genome shotgun sequence (48812 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ33796.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 7-673 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK10472 Location: 1275-243 0 bp Feature: gene Location: 2492-3085 bp Ori: PAZ33761.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK1073 9 Location: 2495-3 080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEH01000419.1 Escherichia coli strain JEONG-5250 NODE_270_length_2777_cov_11.641_ID_539, whole genome shotgun sequence (2777 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-64 3 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: gene Location: 1737-2150 bp Ori: PAZ33282.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEH01000487.1 Escherichia coli strain JEONG-5250 NODE_41_length_35045_cov_7.40747_ID_81, whole genome shotgun sequence (35045 bp)
Overview 1 RT 1: 30307-35046 bp Neighborhood of RT #1 [30307, 35045] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG3 Feature: gene Location: 30307-32874 bp Ori: PAZ33012.1 Gene: mutS Feature: domain Description: mutS1 Location: 30343-32863 bp Feature: domain Description: mutS1 Location: 30343-32863 bp Feature: gene Location: 33034-34494 bp Ori: PAZ33010.1 Feature: domain Description: INT_Rci_Hp1_C Location: 33409-33616 bp Feature: domain Description: INT_Rci_Hp1_C Location: 33409-33616 bp Feature: domain Description: INT_P4_C Location: 33835-34372 bp Feature: domain Description: INT_P4_C Location: 33835 -34372 bp Feature: gene Location: 34491-35045 bp Ori: PAZ33011.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34773-35046 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34773-35 046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG3

Seq: NSEH01000127.1 Escherichia coli strain JEONG-5250 NODE_146_length_10080_cov_10.9066_ID_291, whole genome shotgun sequence (10080 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ41865.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-6 78 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ41867.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)

Seq: NSEH01000119.1 Escherichia coli strain JEONG-5250 NODE_180_length_6937_cov_17.0057_ID_359, whole genome shotgun sequence (6937 bp)
Overview 1 RT 1: 2605-6736 bp Neighborhood of RT #1 [2605, 6765] HTH_28 rve rve_2 PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 2605-3651 bp Ori: PAZ41939.1 Feature: domain Description: HTH_28 Location: 2725-2845 bp Feature: domain Description: HTH_28 Location: 27 25-2845 bp Feature: domain Description: rve Location: 3136-3466 bp Feature: domain Description: rve Location: 3136-3466 bp Feature: domain Description: rve_2 Location: 3493-3598 bp Feature: domain Description: rve_2 Location: 3493-3598 bp Feature: gene Location: 3723-3902 bp Ori: PAZ41940.1 Feature: domain Description: PRK09738 Location: 3726-3879 bp Feature: domain Description: PRK097 38 Location: 37 26-387 9 bp Feature: gene Location: 4467-6146 bp Ori: PAZ41942.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4518-4761 bp Feature: domain Description: RVT_N Location: 4518-47 61 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4806-5448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4806-5448 bp Feature: domain Description: GIIM Note: maturase Location: 5502-5733 bp Feature: domain Description: GIIM Note: maturase Location: 5502-57 33 bp Feature: domain Description: HNHc Note: nucleases Location: 5946-6108 bp Feature: domain Description: HNHc Note: nucleases Location: 5946-6108 bp Feature: gene Location: 6311-6496 bp Feature: gene Location: 6637-6765 bp Feature: domain Description: HNH Note: nucleases Location: 6643-6736 bp Feature: domain Description: HNH Note: nucleases Location: 6643-67 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), rve (pfam00665), rve_2 (pfam13333), PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEH01000128.1 Escherichia coli strain JEONG-5250 NODE_177_length_7047_cov_10.0117_ID_353, whole genome shotgun sequence (7047 bp)
Overview 1 RT 1: 2301-6760 bp Neighborhood of RT #1 [2301, 6837] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ41857.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-28 26 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ41858.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-58 25 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6837 bp Feature: domain Description: InsQ Location: 6406-6760 bp Feature: domain Description: InsQ Location: 6406-6760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEH01000512.1 Escherichia coli strain JEONG-5250 NODE_378_length_993_cov_43.1339_ID_755, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ32934.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)