myRT

myRT report for GCA_002290905.1_ASM229090v1

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Seq: NSEI01000402.1 Escherichia coli strain JEONG-5298 NODE_180_length_3437_cov_35.7118_ID_359, whole genome shotgun sequence (3437 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ33964.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK09738 Location: 1 42-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ33966.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 934-1 1 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 222-1 864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 8-21 49 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3059-31 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEI01000181.1 Escherichia coli strain JEONG-5298 NODE_143_length_6192_cov_26.2991_ID_285, whole genome shotgun sequence (6192 bp)
Overview 1 RT 1: 4338-6192 bp Neighborhood of RT #1 [4338, 6192] ParE_toxin RVT-UG4 Feature: gene Location: 4338-4448 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: gene Location: 4453-4632 bp Feature: gene Location: 4798-5727 bp Ori: PAZ41886.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 502 0-5461 bp Feature: gene Location: 5690-6192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-UG4

Seq: NSEI01000091.1 Escherichia coli strain JEONG-5298 NODE_276_length_993_cov_111.027_ID_551, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ42894.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-43 0 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEI01000349.1 Escherichia coli strain JEONG-5298 NODE_49_length_35998_cov_18.0709_ID_97, whole genome shotgun sequence (35998 bp)
Overview 1 RT 1: 1-5396 bp Neighborhood of RT #1 [1, 5407] RVT-UG3 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 1-1223 bp Ori: PAZ35191.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 283-778 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 283-778 bp Feature: gene Location: 1220-2680 bp Ori: PAZ35192.1 Feature: domain Description: INT_Rci_Hp1_C Location: 1595-1802 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1595-1802 bp Feature: domain Description: INT_P4_C Location: 2021-2558 bp Feature: domain Description: INT_P4 _C Location: 2021-2558 bp Feature: gene Location: 2840-5407 bp Ori: PAZ35223.1 Gene: mutS Feature: domain Description: mutS1 Location: 2876-5396 bp Feature: domain Description: mutS1 Location: 2876-5396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: NSEI01000073.1 Escherichia coli strain JEONG-5298 NODE_304_length_766_cov_37.2535_ID_607, whole genome shotgun sequence (766 bp)
Overview 1 RT 1: 1-673 bp Neighborhood of RT #1 [1, 676] RVT_N RVT-GII Feature: gene Location: 1-676 bp Ori: PAZ42922.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEI01000371.1 Escherichia coli strain JEONG-5298 NODE_6_length_110296_cov_18.9633_ID_11, whole genome shotgun sequence (110296 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ34557.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-6 73 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ34458.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK10739 Location: 2495-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEI01000386.1 Escherichia coli strain JEONG-5298 NODE_170_length_4173_cov_41.1995_ID_339, whole genome shotgun sequence (4173 bp)
Overview 1 RT 1: 1-2901 bp Neighborhood of RT #1 [1, 2915] HTH_28 rve RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 1-832 bp Ori: PAZ34172.1 Feature: domain Description: HTH_28 Location: 121-244 bp Feature: domain Description: HTH_28 Location: 121-244 bp Feature: domain Description: rve Location: 532-829 bp Feature: domain Description: rve Location: 532-829 bp Feature: gene Location: 967-1800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97 0-1408 bp Feature: gene Location: 2037-2447 bp Feature: domain Description: IstB_IS21 Location: 2040-2421 bp Feature: domain Description: IstB_IS21 Location: 2040-2421 bp Feature: gene Location: 2502-2915 bp Ori: PAZ34173.1 Feature: domain Description: Y1_Tnp Location: 2556-2901 bp Feature: domain Description: Y1_Tnp Location: 2556-2901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), rve (pfam00665), RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEI01000279.1 Escherichia coli strain JEONG-5298 NODE_74_length_21309_cov_30.8748_ID_147, whole genome shotgun sequence (21309 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ37523.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ37525.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-28 8 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)

Seq: NSEI01000327.1 Escherichia coli strain JEONG-5298 NODE_131_length_6842_cov_28.6411_ID_261, whole genome shotgun sequence (6842 bp)
Overview 1 RT 1: 2301-6622 bp Neighborhood of RT #1 [2301, 6690] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ35567.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 249 0-2826 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ35568.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 49 -5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6690 bp Ori: PAZ35569.1 Feature: domain Description: InsQ Location: 6409-6622 bp Feature: domain Description: InsQ Location: 6409 -6622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)