myRT

myRT report for GCA_002290925.1_ASM229092v1

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Seq: NSEL01000264.1 Escherichia coli strain JEONG-5453 NODE_47_length_38588_cov_11.6353_ID_93, whole genome shotgun sequence (38588 bp)
Overview 1 RT 1: 1-7986 bp Neighborhood of RT #1 [1, 7997] RVT-UG8 RVT-UG3 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 1-97 bp Feature: gene Location: 536-2554 bp Ori: PAZ43590.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1106-1556 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 06-1 556 bp Feature: gene Location: 2551-3813 bp Ori: PAZ43591.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2833-3328 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2833-3328 bp Feature: gene Location: 3810-5270 bp Ori: PAZ43592.1 Feature: domain Description: INT_Rci_Hp1_C Location: 4185-4392 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 85-4392 bp Feature: domain Description: INT_P4_C Location: 4611-5148 bp Feature: domain Description: INT_P4_C Location: 461 1 -51 48 bp Feature: gene Location: 5430-7997 bp Ori: PAZ43624.1 Gene: mutS Feature: domain Description: mutS1 Location: 5466-7986 bp Feature: domain Description: mutS1 Location: 5466-7986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: NSEL01000055.1 Escherichia coli strain JEONG-5453 NODE_268_length_766_cov_17.6291_ID_535, whole genome shotgun sequence (766 bp)
Overview 1 RT 1: 1-673 bp Neighborhood of RT #1 [1, 676] RVT_N RVT-GII Feature: gene Location: 1-676 bp Ori: PAZ48118.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-2 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEL01000251.1 Escherichia coli strain JEONG-5453 NODE_156_length_3437_cov_27.2716_ID_311, whole genome shotgun sequence (3437 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ43879.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK0973 8 Location: 142-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ43881.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 93 4-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 23 62-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3 059-3 152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEL01000071.1 Escherichia coli strain JEONG-5453 NODE_242_length_993_cov_74.3095_ID_483, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ48100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 30 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 4 81-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEL01000191.1 Escherichia coli strain JEONG-5453 NODE_70_length_21778_cov_26.1847_ID_139, whole genome shotgun sequence (21778 bp)
Overview 1 RT 1: 1-3355 bp Neighborhood of RT #1 [1, 3360] Invasin_D3 RVT-UG4 PrgH Feature: gene Location: 1-987 bp Ori: PAZ44997.1 Feature: domain Description: Invasin_D3 Location: 46-301 bp Feature: domain Description: Invasin_D3 Location: 46-301 bp Feature: gene Location: 991-1371 bp Ori: PAZ44998.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 994-1147 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 994-1147 bp Feature: gene Location: 1453-1854 bp Feature: gene Location: 2158-3360 bp Ori: PAZ45000.1 Feature: domain Description: PrgH Location: 2218-3355 bp Feature: domain Description: PrgH Location: 2218-335 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Invasin_D3 (pfam09134), RVT-UG4, PrgH (TIGR02554)

Seq: NSEL01000212.1 Escherichia coli strain JEONG-5453 NODE_8_length_110296_cov_11.4878_ID_15, whole genome shotgun sequence (110296 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ44709.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-6 73 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ44610.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK10739 Location: 2495-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEL01000330.1 Escherichia coli strain JEONG-5453 NODE_157_length_3408_cov_21.9741_ID_313, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS21 Location: 127 5-1656 bp Feature: gene Location: 1737-2150 bp Ori: PAZ43142.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 17 91-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEL01000265.1 Escherichia coli strain JEONG-5453 NODE_116_length_7047_cov_17.2546_ID_231, whole genome shotgun sequence (7047 bp)
Overview 1 RT 1: 2301-6760 bp Neighborhood of RT #1 [2301, 6837] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ43587.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-28 26 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ43588.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-58 25 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6837 bp Feature: domain Description: InsQ Location: 6406-6760 bp Feature: domain Description: InsQ Location: 6406-6760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEL01000269.1 Escherichia coli strain JEONG-5453 NODE_119_length_6661_cov_20.4115_ID_237, whole genome shotgun sequence (6661 bp)
Overview 1 RT 1: 4030-5978 bp Neighborhood of RT #1 [4030, 6649] DEDD_Tnp_IS110 ParE_toxin RVT-UG4 Invasin_D3 Feature: gene Location: 4030-4338 bp Ori: PAZ43544.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4063-4228 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4063-4228 bp Feature: gene Location: 4338-4448 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: gene Location: 4798-5727 bp Ori: PAZ43545.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: gene Location: 5690-6649 bp Ori: PAZ43546.1 Feature: domain Description: Invasin_D3 Location: 5723-5978 bp Feature: domain Description: Invasin_D3 Location: 5723-59 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), ParE_toxin (pfam05016), RVT-UG4, Invasin_D3 (pfam09134)