myRT

myRT report for GCA_002290945.1_ASM229094v1

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Seq: NSEM01000354.1 Escherichia coli strain JEONG-5507 NODE_314_length_935_cov_17.7463_ID_627, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-932 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-114 bp Feature: gene Location: 260-935 bp Ori: PAZ48814.1 Feature: domain Description: RVT_N Location: 308-545 bp Feature: domain Description: RVT_N Location: 308-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEM01000100.1 Escherichia coli strain JEONG-5507 NODE_75_length_21309_cov_17.5211_ID_149, whole genome shotgun sequence (21309 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ52467.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 52 5-678 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ52469.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-2 886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)

Seq: NSEM01000202.1 Escherichia coli strain JEONG-5507 NODE_197_length_3437_cov_19.9713_ID_393, whole genome shotgun sequence (3437 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ50142.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK0973 8 Location: 142-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ50144.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 93 4-1177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 23 62-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3 059-3 152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEM01000325.1 Escherichia coli strain JEONG-5507 NODE_310_length_993_cov_56.336_ID_619, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ48863.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -4 30 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 4 81-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEM01000186.1 Escherichia coli strain JEONG-5507 NODE_198_length_3408_cov_16.9445_ID_395, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 -643 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS21 Location: 1275 -165 6 bp Feature: gene Location: 1737-2150 bp Ori: PAZ50415.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEM01000059.1 Escherichia coli strain JEONG-5507 NODE_151_length_6192_cov_13.7383_ID_301, whole genome shotgun sequence (6192 bp)
Overview 1 RT 1: 4030-6192 bp Neighborhood of RT #1 [4030, 6192] DEDD_Tnp_IS110 ParE_toxin RVT-UG4 Feature: gene Location: 4030-4338 bp Ori: PAZ53059.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4063-4228 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 406 3-4228 bp Feature: gene Location: 4338-4448 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: gene Location: 4798-5727 bp Ori: PAZ53060.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-546 1 bp Feature: gene Location: 5690-6192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), ParE_toxin (pfam05016), RVT-UG4

Seq: NSEM01000073.1 Escherichia coli strain JEONG-5507 NODE_134_length_7793_cov_15.1633_ID_267, whole genome shotgun sequence (7793 bp)
Overview 1 RT 1: 3254-7575 bp Neighborhood of RT #1 [3254, 7643] rve RVT-GII GIIM InsQ Feature: gene Location: 3254-4453 bp Ori: PAZ52855.1 Feature: domain Description: rve Location: 3443-3779 bp Feature: domain Description: rve Location: 3443-37 7 9 bp Feature: gene Location: 5027-5239 bp Feature: gene Location: 5566-6936 bp Ori: PAZ52856.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5902-6514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5902-6514 bp Feature: domain Description: GIIM Note: maturase Location: 6574-6778 bp Feature: domain Description: GIIM Note: maturase Location: 657 4-67 7 8 bp Feature: gene Location: 6985-7312 bp Feature: gene Location: 7353-7643 bp Ori: PAZ52857.1 Feature: domain Description: InsQ Location: 7362-7575 bp Feature: domain Description: InsQ Location: 7 362-7 57 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEM01000454.1 Escherichia coli strain JEONG-5507 NODE_4_length_110296_cov_8.65446_ID_7, whole genome shotgun sequence (110296 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ48263.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-28 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ48164.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK10739 Location: 2495-308 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)