myRT

myRT report for GCA_002290955.1_ASM229095v1

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Seq: NSEN01000374.1 Escherichia coli strain JEONG-5511 NODE_258_length_3310_cov_23.0324_ID_515, whole genome shotgun sequence (3310 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ54223.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK09738 Location: 1 42-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ54225.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 934-1 1 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 222-1 864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 8-21 49 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3059-31 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSEN01000172.1 Escherichia coli strain JEONG-5511 NODE_187_length_6842_cov_24.4803_ID_373, whole genome shotgun sequence (6842 bp)
Overview 1 RT 1: 2301-6622 bp Neighborhood of RT #1 [2301, 6690] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ63823.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2 490-2 82 6 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ63824.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 562 1-582 5 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6690 bp Ori: PAZ63825.1 Feature: domain Description: InsQ Location: 6409-6622 bp Feature: domain Description: InsQ Location: 6409-662 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSEN01000083.1 Escherichia coli strain JEONG-5511 NODE_389_length_935_cov_29.995_ID_777, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 1-932 bp Neighborhood of RT #1 [1, 935] RVT_N RVT-GII Feature: gene Location: 1-114 bp Feature: gene Location: 260-935 bp Ori: PAZ67434.1 Feature: domain Description: RVT_N Location: 308-545 bp Feature: domain Description: RVT_N Location: 3 08-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-93 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSEN01000304.1 Escherichia coli strain JEONG-5511 NODE_255_length_3408_cov_31.5413_ID_509, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-64 3 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: gene Location: 1737-2150 bp Ori: PAZ55695.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSEN01000501.1 Escherichia coli strain JEONG-5511 NODE_382_length_993_cov_84.8672_ID_763, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ52831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSEN01000360.1 Escherichia coli strain JEONG-5511 NODE_245_length_3777_cov_25.3932_ID_489, whole genome shotgun sequence (3777 bp)
Overview 1 RT 1: 1923-3777 bp Neighborhood of RT #1 [1923, 3777] ParE_toxin RVT-UG4 Feature: gene Location: 1923-2033 bp Feature: domain Description: ParE_toxin Location: 1932-2031 bp Feature: domain Description: ParE_toxin Location: 1932-2031 bp Feature: gene Location: 2038-2217 bp Feature: gene Location: 2383-3312 bp Ori: PAZ54304.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2605-3046 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 26 05-3046 bp Feature: gene Location: 3275-3777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-UG4

Seq: NSEN01000463.1 Escherichia coli strain JEONG-5511 NODE_454_length_585_cov_1.10044_ID_907, whole genome shotgun sequence (585 bp)
Overview 1 RT 1: 1-172 bp Neighborhood of RT #1 [1, 585] RVT-UG8 Feature: gene Location: 1-585 bp Ori: PAZ53383.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 19-172 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 19-17 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8

Seq: NSEN01000490.1 Escherichia coli strain JEONG-5511 NODE_4_length_81861_cov_15.892_ID_7, whole genome shotgun sequence (81861 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ52959.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-28 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: gene Location: 2492-3085 bp Ori: PAZ52893.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK10739 Location: 2495-308 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSEN01000467.1 Escherichia coli strain JEONG-5511 NODE_116_length_13889_cov_16.0817_ID_231, whole genome shotgun sequence (13889 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ53345.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ53347.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749 -2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)