myRT

myRT report for GCA_002291035.1_ASM229103v1

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Seq: NSED01000373.1 Escherichia coli strain JEONG-5084 NODE_190_length_3437_cov_29.319_ID_379, whole genome shotgun sequence (3437 bp)
Overview 1 RT 1: 139-3152 bp Neighborhood of RT #1 [139, 3181] PRK09738 RVT_N RVT-GII GIIM HNHc HNH Feature: gene Location: 139-318 bp Ori: PAZ73200.1 Feature: domain Description: PRK09738 Location: 142-295 bp Feature: domain Description: PRK09738 Location: 1 42-295 bp Feature: gene Location: 883-2562 bp Ori: PAZ73202.1 Gene: ltrA Feature: domain Description: RVT_N Location: 934-1177 bp Feature: domain Description: RVT_N Location: 934-1 1 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 222-1 864 bp Feature: domain Description: GIIM Note: maturase Location: 1918-2149 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 8-21 49 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 2362-2524 bp Feature: gene Location: 2727-2912 bp Feature: gene Location: 3053-3181 bp Feature: domain Description: HNH Note: nucleases Location: 3059-3152 bp Feature: domain Description: HNH Note: nucleases Location: 3059-31 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HNH (pfam01844)

Seq: NSED01000308.1 Escherichia coli strain JEONG-5084 NODE_191_length_3408_cov_23.6312_ID_381, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 202-2136 bp Neighborhood of RT #1 [202, 2150] RVT-GII IstB_IS21 Y1_Tnp Feature: gene Location: 202-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05-643 bp Feature: gene Location: 1272-1682 bp Feature: domain Description: IstB_IS21 Location: 1275-1656 bp Feature: domain Description: IstB_IS2 1 Location: 12 75-1656 bp Feature: gene Location: 1737-2150 bp Ori: PAZ73849.1 Feature: domain Description: Y1_Tnp Location: 1791-2136 bp Feature: domain Description: Y1_Tnp Location: 1791-2 136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695), Y1_Tnp (pfam01797)

Seq: NSED01000318.1 Escherichia coli strain JEONG-5084 NODE_140_length_6842_cov_17.4582_ID_279, whole genome shotgun sequence (6842 bp)
Overview 1 RT 1: 2301-6622 bp Neighborhood of RT #1 [2301, 6690] rve RVT-GII GIIM InsQ Feature: gene Location: 2301-3500 bp Ori: PAZ73808.1 Feature: domain Description: rve Location: 2490-2826 bp Feature: domain Description: rve Location: 2490-2826 bp Feature: gene Location: 4074-4286 bp Feature: gene Location: 4613-5983 bp Ori: PAZ73809.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949-5561 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: domain Description: GIIM Note: maturase Location: 5621-5825 bp Feature: gene Location: 6032-6359 bp Feature: gene Location: 6400-6690 bp Ori: PAZ73810.1 Feature: domain Description: InsQ Location: 6409-6622 bp Feature: domain Description: InsQ Location: 6409-6622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), InsQ (COG0675)

Seq: NSED01000260.1 Escherichia coli strain JEONG-5084 NODE_6_length_110296_cov_9.45759_ID_11, whole genome shotgun sequence (110296 bp)
Overview 1 RT 1: 1-3080 bp Neighborhood of RT #1 [1, 3085] RVT_N RVT-GII PRK10472 PRK10739 Feature: gene Location: 1-676 bp Ori: PAZ74591.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 4 9-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: gene Location: 1272-2435 bp Feature: domain Description: PRK10472 Location: 1275-2430 bp Feature: domain Description: PRK104 72 Location: 1275-24 30 bp Feature: gene Location: 2492-3085 bp Ori: PAZ74492.1 Feature: domain Description: PRK10739 Location: 2495-3080 bp Feature: domain Description: PRK10739 Location: 24 95-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK10472 (low affinity gluconate transporter; Provisional), PRK10739 (YhgN family NAAT transporter)

Seq: NSED01000322.1 Escherichia coli strain JEONG-5084 NODE_75_length_21309_cov_22.4604_ID_149, whole genome shotgun sequence (21309 bp)
Overview 1 RT 1: 1-2886 bp Neighborhood of RT #1 [1, 2891] RVT-UG4 PrgH Feature: gene Location: 1-518 bp Feature: gene Location: 522-902 bp Ori: PAZ73767.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 525-678 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5 25 -678 bp Feature: gene Location: 984-1385 bp Feature: gene Location: 1689-2891 bp Ori: PAZ73769.1 Feature: domain Description: PrgH Location: 1749-2886 bp Feature: domain Description: PrgH Location: 1749-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PrgH (TIGR02554)

Seq: NSED01000050.1 Escherichia coli strain JEONG-5084 NODE_314_length_766_cov_27.7559_ID_627, whole genome shotgun sequence (766 bp)
Overview 1 RT 1: 1-673 bp Neighborhood of RT #1 [1, 676] RVT_N RVT-GII Feature: gene Location: 1-676 bp Ori: PAZ78105.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-6 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NSED01000068.1 Escherichia coli strain JEONG-5084 NODE_289_length_993_cov_80.8533_ID_577, whole genome shotgun sequence (993 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 993] RVT-GII GIIM Feature: gene Location: 1-993 bp Ori: PAZ78003.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-430 bp Feature: domain Description: GIIM Note: maturase Location: 481-715 bp Feature: domain Description: GIIM Note: maturase Location: 481-7 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NSED01000262.1 Escherichia coli strain JEONG-5084 NODE_146_length_6192_cov_19.9021_ID_291, whole genome shotgun sequence (6192 bp)
Overview 1 RT 1: 4030-6192 bp Neighborhood of RT #1 [4030, 6192] DEDD_Tnp_IS110 ParE_toxin RVT-UG4 Feature: gene Location: 4030-4338 bp Ori: PAZ74447.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4063-4228 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4063-4228 bp Feature: gene Location: 4338-4448 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: domain Description: ParE_toxin Location: 4347-4446 bp Feature: gene Location: 4798-5727 bp Ori: PAZ74448.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5020-5461 bp Feature: gene Location: 5690-6192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), ParE_toxin (pfam05016), RVT-UG4